The user may choose to change the symbols for one or more of the species participating in the reaction. This can be done in the following manner. To rename one of the species:
i1 : N = twoSiteModificationG() o1 = S_0+E-->X_1 X_1-->S_0+E X_1-->E+S_1 E+S_1-->X_2 X_2-->E+S_1 X_2-->E+S_2 S_1+F-->Y_1 Y_1-->S_1+F Y_1-->S_0+F S_2+F-->Y_2 Y_2-->S_1+F Y_2-->S_2+F o1 : ReactionNetwork |
i2 : sub(N, {"S_0" => "A"}) o2 = A+E-->X_1 X_1-->A+E X_1-->E+S_1 E+S_1-->X_2 X_2-->E+S_1 X_2-->E+S_2 S_1+F-->Y_1 Y_1-->S_1+F Y_1-->A+F S_2+F-->Y_2 Y_2-->S_1+F Y_2-->S_2+F o2 : ReactionNetwork |
Similarly, more species labels may be replaced.
i3 : sub(N, {"S_0" => "A", "X_1" => "B", "X_2" => "C", "S_1" => "D"}) o3 = A+E-->B B-->A+E B-->E+D E+D-->C C-->E+D C-->E+S_2 D+F-->Y_1 Y_1-->D+F Y_1-->A+F S_2+F-->Y_2 Y_2-->D+F Y_2-->S_2+F o3 : ReactionNetwork |