BamView

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total7,442 of 9,00417%866 of 9569%5365781,4481,79966100
createMenus(JComponent)7450%120%7714014011
drawPairedStackView(Graphics2D, int, float, int, int)5130%620%3232949411
drawSequence(Graphics2D, BamViewRecord, int, String, int)5020%620%3232858511
appendToDetailView(SAMRecord, SAMRecord, FileViewer, List)5000%440%2323585811
main(String[])4390%800%414110510511
drawLineView(Graphics2D, int, float, int, int)3000%400%2121565611
drawBaseAlignment(Graphics2D, int, float, int, int)2800%360%1919595911
drawRead(Graphics2D, BamViewRecord, float, int, int, List, int)2570%320%1717414111
paintComponent(Graphics)22525052%412941%33363910001
iterateOverBam(SamReader, String, int, int, short, float, String)2156723%41510%2224496801
getSequenceOffset(String)1992%1715%910272901
drawStrand(Graphics2D, boolean, int, int, int, float)1890%320%1717404011
bamTopPanel(JFrame)17515747%101254%1012376601
drawStackView(Graphics2D, int, float, int, int)1696327%30411%1718344901
getToolTipText()163105%2228%1213212401
drawLoneRead(Graphics2D, BamViewRecord, int, float, int, int, List, int)1560%180%1010343411
setZoomLevel(int)1480%220%1212353511
getSNPs(SAMRecord)1300%140%88282811
addBamToPanel(JFrame)11613353%12425%89154101
drawTicks(Graphics2D, int, int, float, int, int)1160%100%66181811
drawCoverage(Graphics2D, int, int, float)990%80%55161611
drawScale(Graphics2D, int, int, float, int)930%100%66161611
BamView(List, String, int, FeatureDisplay, Bases, JPanel, JFrame)9248384%161038%11142613201
openBamView(List)920%80%55181811
highlightRange(MouseEvent, int)840%120%77202011
getSAMFileReader(String)818350%10637%79143201
drawYScale(Graphics2D, int)800%100%66181811
drawStrandStackView(Graphics2D, int, float, int, int)740%20%22121211
readFromAlignmentFile(int, int, short, float)732827%1516%89142001
drawArrow(Graphics2D, SAMRecord, int, int, float, int, int)720%40%33111111
getEntry(String, EntryGroup)700%60%44191911
getMate(BamViewRecord)530%60%44141411
showSNPsOnReads(List, Graphics2D, float, int)500%20%228811
readsOverlap(SAMRecord, SAMRecord)460%160%99111111
closeBamPanel()430%60%44121211
drawSelectionRange(Graphics2D, float, int, int, Color)421019%6225%4581201
wrapReadBases(SAMRecord, FileViewer)420%40%338811
getSelectedCheckBoxMenuItem()410%120%77131311
getVersion()390%40%33111111
refreshColourOfBamMenu()380%60%448811
displayAdjustmentWork(DisplayAdjustmentEvent)380%20%22121211
drawTranslucentJointedLine(Graphics2D, int, int, int)370%n/a117711
getColorByJCheckBoxMenuItem(JCheckBoxMenuItem)360%40%336611
addToViewMenu(short)350%n/a117711
displayAdjustmentValueChanged(DisplayAdjustmentEvent)280%60%449911
isFromSameBamFile(BamViewRecord, BamViewRecord, List)270%100%668811
getSequenceLength()251334%3125%234601
setColourByBaseQuality(Graphics2D, byte)250%60%448811
handleFatalError(String)250%20%225511
getYPos(int, int)240%20%224411
getImageIcon(Color)230%n/a115511
setViewportMidPoint()230%n/a114411
handleCanvasMouseDrag(MouseEvent)230%60%448811
isNegativeStrand(SAMRecord, boolean)1920%5116%345701
drawTranslucentLine(Graphics2D, int, int, int)170%n/a115511
close()160%20%226611
getMaxBasesInPanel(int)150%20%223311
openFileViewer(SAMRecord, SAMRecord, List)150%n/a113311
setDisplay(int, int, DisplayAdjustmentEvent)146482%3350%3421601
getReadGroupFrame()140%20%223311
getColourByCoverageColour(BamViewRecord)140%20%224411
isThisBamRecordHighlighted(BamViewRecord)120%20%223311
getColourByCoverageColour(short)100%n/a112211
setSamRecordMapQPredicate(SAMRecordMapQPredicate)100%n/a114411
setViewportBtm()90%n/a113311
setVisible(boolean)80%n/a113311
repaintBamView()0%n/a113311
isCoverageView(float)1881%4450%451301
getBaseAtStartOfView()763%1150%121301
isPairedStackView()0%n/a111111
isStrandStackView()0%n/a111111
isIsizeStackView()0%n/a111111
setHighlightSAMRecord(BamViewRecord)0%n/a112211
setMaxBases(int)0%n/a112211
getReadsInView()0%n/a111111
getBasesInView()0%n/a111111
getHighlightSAMRecord()0%n/a111111
getFeatureDisplay()0%n/a111111
selectionChanged(SelectionChangeEvent)0%n/a112211
setStandaloneMode(boolean)0%n/a112211
isBaseAlignmentView(float)1083%1150%121301
isShowScale()71%1150%120101
getMaxBases()0%n/a111111
isStandaloneMode()0%n/a111111
static {...}45100%n/a0101001
readAlignmentFileHeader()40100%2100%020801
BamView(List, String, int, EntryEdit, FeatureDisplay, Bases, JPanel, JFrame)13100%n/a010301
setSamRecordFlagPredicate(SAMRecordPredicate)10100%n/a010401
getPixPerBaseByWidth()9100%n/a010101
isStackView()100%n/a010101
getJspView()100%n/a010101
getSelection()100%n/a010101
getCombo()100%n/a010101
getSamFileReaderHash()100%n/a010101
getSeqNames()100%n/a010101
getSeqLengths()100%n/a010101
getOffsetLengths()100%n/a010101
getSamRecordFlagPredicate()100%n/a010101
getSamRecordMapQPredicate()100%n/a010101
isConcatSequences()100%n/a010101