uk.ac.sanger.artemis.components.alignment

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
Total21,880 of 25,52714%1,946 of 2,1449%1,5111,6414,4535,212477568125153
BamView7,4421,56217%866909%5365781,4481,7996610001
CoveragePanel1,675925%1700%110114316342252901
LookSeqPanel1,1680%340%3636236236191911
MappedReads.CalculateNewFeatures7960%1100%60601561565511
BamUtils50581661%987041%6510210127641801
MappedReads.CalculateMappedReads5020%360%212187873311
FileSelectionDialog48116625%321633%2733951326901
LineAttributes47522532%234%202410112081201
SnpPanel4506%340%212274834501
RunSamTools4280%380%2929107107101011
SAMRecordFilter4230%240%161696964411
SAMRecordList4200%260%191987876611
GroupBamFrame41323035%320%2425901418901
ReadGroupsFrame3480%180%131376764411
BamView.CreateFeatures3310%240%131368681111
MappedReads3230%140%131370706611
BamView.PopupListener3171%340%212260614501
BamOSXAdapter2830%260%23236969101011
PopupMessageFrame.PopupThread2230%80%101054546611
PrintBamView2020%0%6660604411
ReadCountDialog1638835%101458%111642612401
BamView.Ruler1510%80%7729293311
MappedReads.CalculateTotalMappedReads1360%0%5524242211
AbstractGraphPanel13429%140%131530446801
CRAMReferenceSequenceFile1250%0%111135359911
AbstractGraphPanel.new ActionListener() {...}1214%0%3425261201
BamView.new ActionListener() {...}1140%100%7724242211
LookSeqPanel.new SwingWorker() {...}880%80%6617172211
BamFrame830%80%111125257711
SAMRecordList.new KeyAdapter() {...}810%110%8816162211
BamView.new ActionListener() {...}0%0%4415152211
BamView.PopupListener.new ActionListener() {...}0%0%4413132211
SAMRecordFlagConjunctionPredicate0%100%9922224411
LineAttributes.new ActionListener() {...}0%0%4410102211
SAMRecordList.new MouseAdapter() {...}0%0%4411112211
FileSelectionDialog.new ActionListener() {...}0%0%5513132211
PrintBamView.new ActionListener() {...}0%0%4411112211
BamView.PopupListener.new ActionListener() {...}0%0%3310102211
BamView.new ActionListener() {...}0%0%3310102211
SAMRecordSequenceString0%0%8816166611
BamView.new MouseMotionListener() {...}16%80%6714152301
LookSeqPanel.new MouseAdapter() {...}0%80%6611112211
BamView.new ActionListener() {...}0%0%5512122211
SAMRecordComparator0%120%8816162211
BamView.new ActionListener() {...}0%100%7710102211
BamView.new SequenceComboBox() {...}12%0%2310111201
BamView.PopupListener.5.new Runnable() {...}0%n/a22552211
SAMRecordPositionComparator0%0%4412122211
BamView.new ItemListener() {...}0%0%33772211
BamView.new SwingWorker() {...}0%0%3311112211
LineStyleListRenderer0%n/a3312123311
GroupBamFrame.new ItemListener() {...}0%0%44992211
BamView.new ActionListener() {...}0%0%3310102211
BamView.new ActionListener() {...}0%0%3310102211
BamView.new ActionListener() {...}0%80%66882211
BamOSXAdapter.new BamOSXAdapter() {...}0%0%33992211
ReadGroupsFrame.new ActionListener() {...}0%n/a22772211
LineAttributes.new ItemListener() {...}0%n/a22552211
ReadGroupsFrame.new ItemListener() {...}0%0%33662211
BamView.new ActionListener() {...}0%0%33992211
BamView.new ActionListener() {...}0%0%33662211
AbstractGraphPanel.PopupListener13%0%6712134501
SnpPanel.new ActionListener() {...}13%0%239101201
BamView.new KeyAdapter() {...}0%0%55992211
BamView.new ActionListener() {...}0%0%44992211
PairedReadComparator0%0%4410102211
LineAttributes.new ActionListener() {...}0%0%33662211
AbstractGraphPanel.2.new ActionListener() {...}0%0%44442211
CoveragePanel.new ActionListener() {...}0%0%44442211
BamView.PopupListener.new ActionListener() {...}0%n/a22662211
PopupMessageFrame63%n/a359243501
MappedReads.CalculateMappedReads.new ActionListener() {...}0%n/a22442211
BamView.new ActionListener() {...}0%0%33882211
BamView.new ActionListener() {...}0%0%33662211
ReadCountDialog.new ActionListener() {...}0%0%44882211
ReadGroupsFrame.new ActionListener() {...}0%0%44442211
BamView.new ActionListener() {...}0%0%33772211
LookSeqPanel.new ActionListener() {...}0%n/a22552211
LookSeqPanel.new ActionListener() {...}0%n/a22552211
LookSeqPanel.new ActionListener() {...}0%n/a22552211
BamView.new ActionListener() {...}0%n/a22772211
CoveragePanel.new ActionListener() {...}18%0%23891201
BamView.new ActionListener() {...}0%n/a22662211
BamView.new ActionListener() {...}0%0%33662211
GroupBamFrame.new ActionListener() {...}25%0%34671201
AbstractGraphPanel.new MouseMotionListener() {...}18%0%459102301
BamView.new AdjustmentListener() {...}0%0%44772211
BamView.new ActionListener() {...}0%0%33552211
BamView.new Runnable() {...}0%0%33772211
FileSelectionDialog.new FileFilter() {...}0%0%66773311
LineAttributes.new ChangeListener() {...}0%n/a22332211
CoveragePanel.HeatMapLn0%n/a22772211
SAMRecordFilter.new KeyAdapter() {...}0%0%33442211
ReadCountDialog.new ActionListener() {...}0%n/a22772211
BamView.new ActionListener() {...}0%0%33552211
BamView.new ActionListener() {...}0%0%33552211
BamView.new ActionListener() {...}0%0%33442211
BamView.new ActionListener() {...}0%0%33442211
SAMRecordFilter.new ActionListener() {...}0%n/a22332211
SAMRecordFilter.new ActionListener() {...}0%n/a22332211
BamView.BamReadTask69%n/a035180301
BamView.new ActionListener() {...}0%0%33662211
ReadCountDialog.new ActionListener() {...}0%n/a22552211
BamView.new ActionListener() {...}0%n/a22442211
BamView.PopupListener.new ActionListener() {...}0%n/a22332211
LookSeqPanel.new ActionListener() {...}0%n/a22332211
LookSeqPanel.new ActionListener() {...}0%n/a22332211
LookSeqPanel.new ActionListener() {...}0%n/a22332211
LookSeqPanel.new ActionListener() {...}0%n/a22332211
LookSeqPanel.new ActionListener() {...}0%n/a22332211
LookSeqPanel.new ActionListener() {...}0%n/a22332211
LookSeqPanel.new ActionListener() {...}0%n/a22332211
LookSeqPanel.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}36%0%23561201
BamView.new ActionListener() {...}0%n/a22442211
BamView.new ActionListener() {...}0%n/a22332211
FileSelectionDialog.new ActionListener() {...}0%n/a22332211
SAMRecordMapQPredicate0%0%33662211
BamView.PopupListener.new Runnable() {...}0%n/a22332211
FileSelectionDialog.new ActionListener() {...}0%n/a22442211
SAMRecordList.new SwingWorker() {...}0%n/a22552211
SAMRecordList.new ActionListener() {...}0%n/a22332211
SAMRecordList.new WindowAdapter() {...}0%n/a22332211
BamView.new ChangeListener() {...}39%n/a12341201
BamView.new ActionListener() {...}0%n/a22442211
BamView.new Runnable() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
RunSamTools.StdoutHandler0%n/a22552211
RunSamTools.StderrHandler0%n/a22552211
BamViewRecord0%n/a11551111
MappedReads.CalculateNewFeatures.MarkerObj0%n/a11441111
SAMRecordFlagPredicate14692%60%3102160501
GroupBamFrame.2.new Runnable() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
ReadGroupsFrame.new ActionListener() {...}0%n/a22332211
SAMRecordFilter.new ActionListener() {...}0%n/a22332211
ReadCount68%50%12290101
LookSeqPanel.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
BamView.new ActionListener() {...}0%n/a22332211
SAMRecordList.new AdjustmentListener() {...}0%n/a22332211
GroupBamFrame.new ActionListener() {...}52%n/a12231201
CoveragePanel.new ActionListener() {...}42%n/a12341201
GroupBamFrame.new FocusAdapter() {...}60%n/a12231201
BamView.PairedRead0%n/a11111111
GroupBamFrame.new ActionListener() {...}54%n/a12231201