Test case 1
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: MockFile mockFile0 = new MockFile("+", "+");
5: Strand strand0 = bases0.getReverseStrand();
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: codonUsageAlgorithm0.getAverage();
Test case 2
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: Strand strand0 = bases0.getReverseStrand();
5: MockFile mockFile0 = new MockFile("+");
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: Float float0 = codonUsageAlgorithm0.getMinimumInternal();
9: assertTrue(codonUsageAlgorithm0.scalingFlag());
10: assertEquals("Reverse Codon Usage Scores from +", codonUsageAlgorithm0.getAlgorithmName());
11: assertEquals(0.0F, (float)float0, 0.01F);
Test case 3
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: MockFile mockFile0 = new MockFile("+", "+");
5: Strand strand0 = bases0.getReverseStrand();
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: int int0 = codonUsageAlgorithm0.getValueCount();
9: assertTrue(codonUsageAlgorithm0.scalingFlag());
10: assertEquals("Reverse Codon Usage Scores from +", codonUsageAlgorithm0.getAlgorithmName());
11: assertEquals(3, int0);
Test case 4
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: MockFile mockFile0 = new MockFile("+");
5: Strand strand0 = bases0.getReverseStrand();
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: Float float0 = codonUsageAlgorithm0.getMaximumInternal();
9: assertTrue(codonUsageAlgorithm0.scalingFlag());
10: assertEquals(2.0F, (float)float0, 0.01F);
11: assertEquals("Reverse Codon Usage Scores from +", codonUsageAlgorithm0.getAlgorithmName());
Test case 5
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: MockFile mockFile0 = new MockFile("+", "+");
5: Strand strand0 = bases0.getReverseStrand();
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: float[] floatArray0 = new float[7];
9: codonUsageAlgorithm0.getValues(5, 1, floatArray0);
Test case 6
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: MockFile mockFile0 = new MockFile("+");
5: Strand strand0 = bases0.getReverseStrand();
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: float[] floatArray0 = new float[7];
9: codonUsageAlgorithm0.getValues((-1305), 1, floatArray0);
Test case 7
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: MockFile mockFile0 = new MockFile("+", "+");
5: Strand strand0 = bases0.getReverseStrand();
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: Integer integer0 = codonUsageAlgorithm0.getDefaultWindowSize();
9: assertTrue(codonUsageAlgorithm0.scalingFlag());
10: assertEquals("Reverse Codon Usage Scores from +", codonUsageAlgorithm0.getAlgorithmName());
11: assertNotNull(integer0);
12: assertEquals(120, (int)integer0);
Test case 8
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: Strand strand0 = bases0.getReverseStrand();
5: MockFile mockFile0 = new MockFile("+");
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: Integer integer0 = codonUsageAlgorithm0.getDefaultMaxWindowSize();
9: assertTrue(codonUsageAlgorithm0.scalingFlag());
10: assertEquals("Reverse Codon Usage Scores from +", codonUsageAlgorithm0.getAlgorithmName());
11: assertNotNull(integer0);
12: assertEquals(500, (int)integer0);
Test case 9
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: MockFile mockFile0 = new MockFile("+", "+");
5: Strand strand0 = bases0.getReverseStrand();
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: Integer integer0 = codonUsageAlgorithm0.getDefaultMinWindowSize();
9: assertEquals("Reverse Codon Usage Scores from +", codonUsageAlgorithm0.getAlgorithmName());
10: assertNotNull(integer0);
11: assertEquals(24, (int)integer0);
12: assertTrue(codonUsageAlgorithm0.scalingFlag());
Test case 10
1: FileSystemHandling.shouldAllThrowIOExceptions();
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("+");
3: Bases bases0 = new Bases(emblStreamSequence0);
4: Strand strand0 = bases0.getReverseStrand();
5: MockFile mockFile0 = new MockFile("+");
6: CodonUsageWeight codonUsageWeight0 = new CodonUsageWeight(mockFile0, strand0);
7: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, codonUsageWeight0);
8: Integer integer0 = codonUsageAlgorithm0.getDefaultStepSize((-5));
9: assertEquals("Reverse Codon Usage Scores from +", codonUsageAlgorithm0.getAlgorithmName());
10: assertNull(integer0);
11: assertTrue(codonUsageAlgorithm0.scalingFlag());
Test case 11
1: Bases bases0 = new Bases((Sequence) null);
2: Strand strand0 = bases0.getForwardStrand();
3: CodonUsageAlgorithm codonUsageAlgorithm0 = new CodonUsageAlgorithm(strand0, (CodonUsageWeight) null);
Source Code
1: No source found for uk.ac.sanger.artemis.plot.CodonUsageAlgorithm
EvoSuite Parameters
- TARGET_CLASS: uk.ac.sanger.artemis.plot.CodonUsageAlgorithm
- Size: 11
- Length: 85
- criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
- Coverage: 0.5772237298723436
- BranchCoverage: 0.4857142857142857
- MethodCoverage: 0.9090909090909091
- OutputCoverage: 0.24503311258278146
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