BamView |   | 17% |   | 9% | 536 | 578 | 1,448 | 1,799 | 66 | 100 | 0 | 1 |
CoveragePanel |   | 5% |  | 0% | 110 | 114 | 316 | 342 | 25 | 29 | 0 | 1 |
LookSeqPanel |  | 0% |  | 0% | 36 | 36 | 236 | 236 | 19 | 19 | 1 | 1 |
MappedReads.CalculateNewFeatures |  | 0% |  | 0% | 60 | 60 | 156 | 156 | 5 | 5 | 1 | 1 |
BamUtils |   | 61% |   | 41% | 65 | 102 | 101 | 276 | 4 | 18 | 0 | 1 |
MappedReads.CalculateMappedReads |  | 0% |  | 0% | 21 | 21 | 87 | 87 | 3 | 3 | 1 | 1 |
FileSelectionDialog |   | 25% |   | 33% | 27 | 33 | 95 | 132 | 6 | 9 | 0 | 1 |
LineAttributes |   | 32% |  | 4% | 20 | 24 | 101 | 120 | 8 | 12 | 0 | 1 |
SnpPanel |  | 6% |  | 0% | 21 | 22 | 74 | 83 | 4 | 5 | 0 | 1 |
RunSamTools |  | 0% |  | 0% | 29 | 29 | 107 | 107 | 10 | 10 | 1 | 1 |
SAMRecordFilter |  | 0% |  | 0% | 16 | 16 | 96 | 96 | 4 | 4 | 1 | 1 |
SAMRecordList |  | 0% |  | 0% | 19 | 19 | 87 | 87 | 6 | 6 | 1 | 1 |
GroupBamFrame |   | 35% |  | 0% | 24 | 25 | 90 | 141 | 8 | 9 | 0 | 1 |
ReadGroupsFrame |  | 0% |  | 0% | 13 | 13 | 76 | 76 | 4 | 4 | 1 | 1 |
BamView.CreateFeatures |  | 0% |  | 0% | 13 | 13 | 68 | 68 | 1 | 1 | 1 | 1 |
MappedReads |  | 0% |  | 0% | 13 | 13 | 70 | 70 | 6 | 6 | 1 | 1 |
BamView.PopupListener |  | 1% |  | 0% | 21 | 22 | 60 | 61 | 4 | 5 | 0 | 1 |
BamOSXAdapter |  | 0% |  | 0% | 23 | 23 | 69 | 69 | 10 | 10 | 1 | 1 |
PopupMessageFrame.PopupThread |  | 0% |  | 0% | 10 | 10 | 54 | 54 | 6 | 6 | 1 | 1 |
PrintBamView |  | 0% | | 0% | 6 | 6 | 60 | 60 | 4 | 4 | 1 | 1 |
ReadCountDialog |   | 35% |   | 58% | 11 | 16 | 42 | 61 | 2 | 4 | 0 | 1 |
BamView.Ruler |  | 0% |  | 0% | 7 | 7 | 29 | 29 | 3 | 3 | 1 | 1 |
MappedReads.CalculateTotalMappedReads |  | 0% | | 0% | 5 | 5 | 24 | 24 | 2 | 2 | 1 | 1 |
AbstractGraphPanel |  | 29% |  | 0% | 13 | 15 | 30 | 44 | 6 | 8 | 0 | 1 |
CRAMReferenceSequenceFile |  | 0% | | 0% | 11 | 11 | 35 | 35 | 9 | 9 | 1 | 1 |
AbstractGraphPanel.new ActionListener() {...} |  | 4% | | 0% | 3 | 4 | 25 | 26 | 1 | 2 | 0 | 1 |
BamView.new ActionListener() {...} |  | 0% |  | 0% | 7 | 7 | 24 | 24 | 2 | 2 | 1 | 1 |
LookSeqPanel.new SwingWorker() {...} |  | 0% |  | 0% | 6 | 6 | 17 | 17 | 2 | 2 | 1 | 1 |
BamFrame |  | 0% |  | 0% | 11 | 11 | 25 | 25 | 7 | 7 | 1 | 1 |
SAMRecordList.new KeyAdapter() {...} |  | 0% |  | 0% | 8 | 8 | 16 | 16 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 4 | 4 | 15 | 15 | 2 | 2 | 1 | 1 |
BamView.PopupListener.new ActionListener() {...} | | 0% | | 0% | 4 | 4 | 13 | 13 | 2 | 2 | 1 | 1 |
SAMRecordFlagConjunctionPredicate | | 0% |  | 0% | 9 | 9 | 22 | 22 | 4 | 4 | 1 | 1 |
LineAttributes.new ActionListener() {...} | | 0% | | 0% | 4 | 4 | 10 | 10 | 2 | 2 | 1 | 1 |
SAMRecordList.new MouseAdapter() {...} | | 0% | | 0% | 4 | 4 | 11 | 11 | 2 | 2 | 1 | 1 |
FileSelectionDialog.new ActionListener() {...} | | 0% | | 0% | 5 | 5 | 13 | 13 | 2 | 2 | 1 | 1 |
PrintBamView.new ActionListener() {...} | | 0% | | 0% | 4 | 4 | 11 | 11 | 2 | 2 | 1 | 1 |
BamView.PopupListener.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 10 | 10 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 10 | 10 | 2 | 2 | 1 | 1 |
SAMRecordSequenceString | | 0% | | 0% | 8 | 8 | 16 | 16 | 6 | 6 | 1 | 1 |
BamView.new MouseMotionListener() {...} | | 16% |  | 0% | 6 | 7 | 14 | 15 | 2 | 3 | 0 | 1 |
LookSeqPanel.new MouseAdapter() {...} | | 0% |  | 0% | 6 | 6 | 11 | 11 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 5 | 5 | 12 | 12 | 2 | 2 | 1 | 1 |
SAMRecordComparator | | 0% |  | 0% | 8 | 8 | 16 | 16 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% |  | 0% | 7 | 7 | 10 | 10 | 2 | 2 | 1 | 1 |
BamView.new SequenceComboBox() {...} | | 12% | | 0% | 2 | 3 | 10 | 11 | 1 | 2 | 0 | 1 |
BamView.PopupListener.5.new Runnable() {...} | | 0% | | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |
SAMRecordPositionComparator | | 0% | | 0% | 4 | 4 | 12 | 12 | 2 | 2 | 1 | 1 |
BamView.new ItemListener() {...} | | 0% | | 0% | 3 | 3 | 7 | 7 | 2 | 2 | 1 | 1 |
BamView.new SwingWorker() {...} | | 0% | | 0% | 3 | 3 | 11 | 11 | 2 | 2 | 1 | 1 |
LineStyleListRenderer | | 0% | | n/a | 3 | 3 | 12 | 12 | 3 | 3 | 1 | 1 |
GroupBamFrame.new ItemListener() {...} | | 0% | | 0% | 4 | 4 | 9 | 9 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 10 | 10 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 10 | 10 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% |  | 0% | 6 | 6 | 8 | 8 | 2 | 2 | 1 | 1 |
BamOSXAdapter.new BamOSXAdapter() {...} | | 0% | | 0% | 3 | 3 | 9 | 9 | 2 | 2 | 1 | 1 |
ReadGroupsFrame.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 7 | 7 | 2 | 2 | 1 | 1 |
LineAttributes.new ItemListener() {...} | | 0% | | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |
ReadGroupsFrame.new ItemListener() {...} | | 0% | | 0% | 3 | 3 | 6 | 6 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 9 | 9 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 6 | 6 | 2 | 2 | 1 | 1 |
AbstractGraphPanel.PopupListener | | 13% | | 0% | 6 | 7 | 12 | 13 | 4 | 5 | 0 | 1 |
SnpPanel.new ActionListener() {...} | | 13% | | 0% | 2 | 3 | 9 | 10 | 1 | 2 | 0 | 1 |
BamView.new KeyAdapter() {...} | | 0% | | 0% | 5 | 5 | 9 | 9 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 4 | 4 | 9 | 9 | 2 | 2 | 1 | 1 |
PairedReadComparator | | 0% | | 0% | 4 | 4 | 10 | 10 | 2 | 2 | 1 | 1 |
LineAttributes.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 6 | 6 | 2 | 2 | 1 | 1 |
AbstractGraphPanel.2.new ActionListener() {...} | | 0% | | 0% | 4 | 4 | 4 | 4 | 2 | 2 | 1 | 1 |
CoveragePanel.new ActionListener() {...} | | 0% | | 0% | 4 | 4 | 4 | 4 | 2 | 2 | 1 | 1 |
BamView.PopupListener.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 6 | 6 | 2 | 2 | 1 | 1 |
PopupMessageFrame | | 63% | | n/a | 3 | 5 | 9 | 24 | 3 | 5 | 0 | 1 |
MappedReads.CalculateMappedReads.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 8 | 8 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 6 | 6 | 2 | 2 | 1 | 1 |
ReadCountDialog.new ActionListener() {...} | | 0% | | 0% | 4 | 4 | 8 | 8 | 2 | 2 | 1 | 1 |
ReadGroupsFrame.new ActionListener() {...} | | 0% | | 0% | 4 | 4 | 4 | 4 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 7 | 7 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 7 | 7 | 2 | 2 | 1 | 1 |
CoveragePanel.new ActionListener() {...} | | 18% | | 0% | 2 | 3 | 8 | 9 | 1 | 2 | 0 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 6 | 6 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 6 | 6 | 2 | 2 | 1 | 1 |
GroupBamFrame.new ActionListener() {...} | | 25% | | 0% | 3 | 4 | 6 | 7 | 1 | 2 | 0 | 1 |
AbstractGraphPanel.new MouseMotionListener() {...} | | 18% | | 0% | 4 | 5 | 9 | 10 | 2 | 3 | 0 | 1 |
BamView.new AdjustmentListener() {...} | | 0% | | 0% | 4 | 4 | 7 | 7 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 5 | 5 | 2 | 2 | 1 | 1 |
BamView.new Runnable() {...} | | 0% | | 0% | 3 | 3 | 7 | 7 | 2 | 2 | 1 | 1 |
FileSelectionDialog.new FileFilter() {...} | | 0% | | 0% | 6 | 6 | 7 | 7 | 3 | 3 | 1 | 1 |
LineAttributes.new ChangeListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
CoveragePanel.HeatMapLn | | 0% | | n/a | 2 | 2 | 7 | 7 | 2 | 2 | 1 | 1 |
SAMRecordFilter.new KeyAdapter() {...} | | 0% | | 0% | 3 | 3 | 4 | 4 | 2 | 2 | 1 | 1 |
ReadCountDialog.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 7 | 7 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 5 | 5 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 5 | 5 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 4 | 4 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 4 | 4 | 2 | 2 | 1 | 1 |
SAMRecordFilter.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
SAMRecordFilter.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.BamReadTask | | 69% | | n/a | 0 | 3 | 5 | 18 | 0 | 3 | 0 | 1 |
BamView.new ActionListener() {...} | | 0% | | 0% | 3 | 3 | 6 | 6 | 2 | 2 | 1 | 1 |
ReadCountDialog.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
BamView.PopupListener.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 36% | | 0% | 2 | 3 | 5 | 6 | 1 | 2 | 0 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
FileSelectionDialog.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
SAMRecordMapQPredicate | | 0% | | 0% | 3 | 3 | 6 | 6 | 2 | 2 | 1 | 1 |
BamView.PopupListener.new Runnable() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
FileSelectionDialog.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
SAMRecordList.new SwingWorker() {...} | | 0% | | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |
SAMRecordList.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
SAMRecordList.new WindowAdapter() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ChangeListener() {...} | | 39% | | n/a | 1 | 2 | 3 | 4 | 1 | 2 | 0 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
BamView.new Runnable() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
RunSamTools.StdoutHandler | | 0% | | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |
RunSamTools.StderrHandler | | 0% | | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |
BamViewRecord | | 0% | | n/a | 1 | 1 | 5 | 5 | 1 | 1 | 1 | 1 |
MappedReads.CalculateNewFeatures.MarkerObj | | 0% | | n/a | 1 | 1 | 4 | 4 | 1 | 1 | 1 | 1 |
SAMRecordFlagPredicate |  | 92% | | 60% | 3 | 10 | 2 | 16 | 0 | 5 | 0 | 1 |
GroupBamFrame.2.new Runnable() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
ReadGroupsFrame.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
SAMRecordFilter.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
ReadCount | | 68% | | 50% | 1 | 2 | 2 | 9 | 0 | 1 | 0 | 1 |
LookSeqPanel.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
BamView.new ActionListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
SAMRecordList.new AdjustmentListener() {...} | | 0% | | n/a | 2 | 2 | 3 | 3 | 2 | 2 | 1 | 1 |
GroupBamFrame.new ActionListener() {...} | | 52% | | n/a | 1 | 2 | 2 | 3 | 1 | 2 | 0 | 1 |
CoveragePanel.new ActionListener() {...} | | 42% | | n/a | 1 | 2 | 3 | 4 | 1 | 2 | 0 | 1 |
GroupBamFrame.new FocusAdapter() {...} | | 60% | | n/a | 1 | 2 | 2 | 3 | 1 | 2 | 0 | 1 |
BamView.PairedRead | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
GroupBamFrame.new ActionListener() {...} | | 54% | | n/a | 1 | 2 | 2 | 3 | 1 | 2 | 0 | 1 |