AlignmentViewer

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total3,608 of 3,6080%434 of 4340%2762767697695959
drawLabels(Graphics)5050%240%1313787811
splitMatches(boolean, int, int, int)3430%440%2323606011
getDifferenceCoords(boolean)2790%420%2222616111
drawAlignments(Graphics)2750%340%1818606011
popupMenu(MouseEvent)2240%20%22464611
flippingContig(boolean, int, int)1910%380%2020292911
reorder(boolean, int, int, int)1870%340%1818262611
AlignmentViewer(FeatureDisplay, FeatureDisplay, ComparisonData)1820%n/a11464611
getAlignMatchFromPosition(Point)1780%140%88313111
getMatchCoords(int, AlignMatch, int, int, boolean, boolean, float, float, int, int, boolean, boolean, boolean)1440%360%1919383811
selectFromSubjectRanges(RangeVector)1220%260%1414363611
selectFromQueryRanges(RangeVector)1220%260%1414363611
selectionChanged()1010%160%99232311
paintComponentForPrint(Graphics, boolean)810%120%77202011
paintComponent(Graphics)720%80%55171711
removeMatches(Vector)710%60%44141411
isVisible(AlignMatch)520%180%1010141411
createColours(String, Color)460%20%229911
makeColours()460%20%227711
toggleSelection(Point)440%80%55131311
alignAt(AlignMatch)380%20%227711
getScreenPosition(float, int, int)220%40%336611
handleCanvasMousePress(MouseEvent)190%40%337711
subjectIsRevComp()190%40%335511
queryIsRevComp()190%40%335511
handleCanvasSingleClick(MouseEvent)180%40%336611
modifiersForLockToggle(MouseEvent)120%40%332211
setSelection(AlignMatch)120%n/a114411
isMenuTrigger(MouseEvent)120%40%334411
getRealSubjectSequenceStart(AlignMatch, int, boolean)120%20%223311
getRealSubjectSequenceEnd(AlignMatch, int, boolean)120%20%223311
getRealQuerySequenceStart(AlignMatch, int, boolean)120%20%223311
getRealQuerySequenceEnd(AlignMatch, int, boolean)120%20%223311
toggleDisplayLock()110%20%223311
handleCanvasDoubleClick(MouseEvent)100%20%223311
setSubjectSequencePosition(DisplayAdjustmentEvent)60%n/a113311
setQuerySequencePosition(DisplayAdjustmentEvent)60%n/a113311
removeAlignmentSelectionChangeListener(AlignmentSelectionChangeListener)60%n/a112211
removeAlignmentListener(AlignmentListener)60%n/a112211
invalidate()60%n/a113311
lockDisplays()60%n/a113311
unlockDisplays()60%n/a113311
addAlignmentSelectionChangeListener(AlignmentSelectionChangeListener)50%n/a112211
addAlignmentListener(AlignmentListener)50%n/a112211
getSubjectForwardStrand()50%n/a111111
getQueryForwardStrand()50%n/a111111
disableSelection()0%n/a112211
enableSelection()0%n/a112211
sequenceChanged(SequenceChangeEvent)0%n/a112211
offerToFlip()0%n/a111111
getSubjectEntryGroup()0%n/a111111
getQueryEntryGroup()0%n/a111111
getSubjectDisplay()0%n/a111111
getQueryDisplay()0%n/a111111
getOrigSubjectForwardStrand()0%n/a111111
getOrigQueryForwardStrand()0%n/a111111
displaysAreLocked()0%n/a111111
getComparisonData()0%n/a111111
static {...}0%n/a111111