getNucLocation(Feature, FeatureLoc) |  | 0% |  | 0% | 10 | 10 | 29 | 29 | 1 | 1 |
deleteFeature(Feature) |  | 0% |  | 0% | 7 | 7 | 37 | 37 | 1 | 1 |
autoGenerateSplicedFeatureName(String) |  | 0% |  | 0% | 9 | 9 | 26 | 26 | 1 | 1 |
isFirstUtr(String, boolean) |  | 0% |  | 0% | 15 | 15 | 28 | 28 | 1 | 1 |
autoGeneratePepName(String) |  | 0% |  | 0% | 7 | 7 | 22 | 22 | 1 | 1 |
autoGenerateFeatureName(String, String) |  | 0% |  | 0% | 5 | 5 | 15 | 15 | 1 | 1 |
getTranscriptFromName(String) |   | 44% |   | 33% | 10 | 13 | 25 | 42 | 0 | 1 |
isSplicedFeatures(String) |  | 0% |  | 0% | 7 | 7 | 21 | 21 | 1 | 1 |
getFeatureFromId(String) |  | 0% |  | 0% | 7 | 7 | 29 | 29 | 1 | 1 |
isUniqueName(String) |  | 0% |  | 0% | 9 | 9 | 22 | 22 | 1 | 1 |
deleteTranscript(String) |  | 0% |  | 0% | 3 | 3 | 13 | 13 | 1 | 1 |
autoGenerateTanscriptName(String) |  | 0% |  | 0% | 3 | 3 | 8 | 8 | 1 | 1 |
getFeatureFromHash(String, Hashtable) |  | 0% |  | 0% | 4 | 4 | 9 | 9 | 1 | 1 |
correctSpliceSiteAssignments() |   | 59% |   | 58% | 3 | 7 | 9 | 23 | 0 | 1 |
updateUniqueName(String, String, Set) |  | 0% |  | 0% | 2 | 2 | 8 | 8 | 1 | 1 |
isTranscript(String) |  | 0% |  | 0% | 3 | 3 | 7 | 7 | 1 | 1 |
add3PrimeUtr(String, Feature) |  | 0% |  | 0% | 2 | 2 | 6 | 6 | 1 | 1 |
add5PrimeUtr(String, Feature) |  | 0% |  | 0% | 2 | 2 | 6 | 6 | 1 | 1 |
addOtherFeatures(String, Feature) |  | 0% |  | 0% | 2 | 2 | 6 | 6 | 1 | 1 |
getProtein(String) |  | 0% |  | 0% | 3 | 3 | 10 | 10 | 1 | 1 |
updateNames(Hashtable, String, String) |  | 0% |  | 0% | 2 | 2 | 5 | 5 | 1 | 1 |
getGeneUniqueName() |  | 0% | | n/a | 1 | 1 | 3 | 3 | 1 | 1 |
searchForChildren(Hashtable, String, Set) |   | 85% |   | 66% | 3 | 7 | 1 | 13 | 0 | 1 |
getSplicedFeatures(String) |   | 86% |   | 83% | 1 | 4 | 4 | 12 | 0 | 1 |
getTranscriptFeatureFromName(String) |   | 83% |   | 66% | 2 | 4 | 3 | 9 | 0 | 1 |
get3UtrOfTranscript(String) |   | 53% |   | 50% | 1 | 2 | 1 | 3 | 0 | 1 |
get5UtrOfTranscript(String) |   | 53% |   | 50% | 1 | 2 | 1 | 3 | 0 | 1 |
getOtherFeaturesOfTranscript(String) |   | 53% |   | 50% | 1 | 2 | 1 | 3 | 0 | 1 |
getChildren(Feature) |   | 95% |   | 90% | 1 | 6 | 3 | 25 | 0 | 1 |
setSeqlen(int) |  | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
setSrcfeature_id(int) |  | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
getTranscriptNames() |   | 91% |  | 100% | 0 | 2 | 2 | 8 | 0 | 1 |
containsTranscript(StringVector) |   | 90% |  | 100% | 0 | 3 | 2 | 8 | 0 | 1 |
getSeqlen() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getSrcfeature_id() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getSplicedFeatures() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getSpliceSitesOfTranscript(String, String) |   | 95% |   | 83% | 1 | 4 | 1 | 9 | 0 | 1 |
getSpliceTypes(String) |   | 94% |   | 75% | 1 | 3 | 1 | 8 | 0 | 1 |
getSplicedFeaturesOfTranscript(String) |   | 84% |   | 50% | 1 | 2 | 1 | 3 | 0 | 1 |
ChadoCanonicalGene() |  | 100% | | n/a | 0 | 1 | 0 | 7 | 0 | 1 |
addSplicedFeatures(String, Feature) |  | 100% |  | 100% | 0 | 2 | 0 | 6 | 0 | 1 |
getQualifier(Feature, String) |  | 100% |  | 100% | 0 | 2 | 0 | 4 | 0 | 1 |
getProteinOfTranscript(String) |  | 100% |  | 100% | 0 | 2 | 0 | 3 | 0 | 1 |
addSplicedFeatures(String, Feature, boolean) |  | 100% |   | 50% | 1 | 2 | 0 | 4 | 0 | 1 |
addProtein(String, Feature) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |
addTranscript(Feature) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |
setGene(Feature) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |
getGene() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |
getTranscripts() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |