Test case 1
1: char[] charArray0 = new char[9];
2: charArray0[0] = ']';
3: charArray0[1] = '';
4: charArray0[2] = 'D';
5: charArray0[3] = '2';
6: charArray0[4] = '2';
7: charArray0[5] = 'G';
8: charArray0[6] = 'e';
9: charArray0[7] = 't';
10: charArray0[8] = 'c';
11: Short short0 = new Short((short)0);
12: Integer integer0 = JLayeredPane.DEFAULT_LAYER;
13: PartialSequence partialSequence0 = new PartialSequence(charArray0, (-145), 0, short0, integer0);
14: Bases bases0 = new Bases(partialSequence0);
15: Strand strand0 = bases0.getReverseStrand();
16: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
17: gCSDWindowAlgorithm0.getDefaultMinWindowSize();
Test case 2
1: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm((Strand) null);
2: gCSDWindowAlgorithm0.getMinimumInternal();
3: gCSDWindowAlgorithm0.getDefaultWindowSize();
4: String string0 = "qes0\\";
5: boolean boolean0 = true;
6: gCSDWindowAlgorithm0.setUserMaxMin(boolean0);
7: gCSDWindowAlgorithm0.setRevCompDisplay(boolean0);
8: gCSDWindowAlgorithm0.getMinimumInternal();
9: boolean boolean1 = false;
10: gCSDWindowAlgorithm0.setScalingFlag(boolean1);
11: gCSDWindowAlgorithm0.setAlgorithmName(string0);
12: gCSDWindowAlgorithm0.getDefaultWindowSize();
13: gCSDWindowAlgorithm0.setUserMaxMin(boolean0);
14: boolean boolean2 = false;
15: int int0 = 0;
16: int int1 = 1039;
17: float[] floatArray0 = new float[1];
18: float float0 = 0.0F;
19: floatArray0[0] = float0;
20: gCSDWindowAlgorithm0.getValues(int0, int1, floatArray0);
21: gCSDWindowAlgorithm0.setScalingFlag(boolean2);
22: gCSDWindowAlgorithm0.getDefaultWindowSize();
23: int int2 = 201;
24: gCSDWindowAlgorithm0.getDefaultStepSize(int2);
25: gCSDWindowAlgorithm0.getDefaultWindowSize();
26: gCSDWindowAlgorithm0.getDefaultMaxWindowSize();
27: gCSDWindowAlgorithm0.getValueCount();
28: gCSDWindowAlgorithm0.getMaximumInternal();
29: gCSDWindowAlgorithm0.getValueCount();
Test case 3
1: char[] charArray0 = new char[3];
2: charArray0[0] = 'c';
3: charArray0[1] = 'u';
4: charArray0[2] = '+';
5: Short short0 = new Short((short) (-961));
6: Integer integer0 = JLayeredPane.MODAL_LAYER;
7: PartialSequence partialSequence0 = new PartialSequence(charArray0, 100, 5, short0, integer0);
8: Bases bases0 = new Bases(partialSequence0);
9: Strand strand0 = bases0.getReverseStrand();
10: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
11: float[] floatArray0 = new float[5];
12: floatArray0[0] = (float) 'u';
13: floatArray0[1] = (float) 1;
14: floatArray0[2] = (float) 100;
15: floatArray0[3] = (float) 'u';
16: floatArray0[4] = (float) 'c';
17: gCSDWindowAlgorithm0.getValues(16, 5, floatArray0);
Test case 4
1: char[] charArray0 = new char[2];
2: charArray0[0] = '(';
3: charArray0[1] = '?';
4: int int0 = 3893;
5: Short short0 = new Short((short)0);
6: Integer integer0 = JLayeredPane.DEFAULT_LAYER;
7: PartialSequence partialSequence0 = new PartialSequence(charArray0, 0, 3893, short0, integer0);
8: Bases bases0 = new Bases(partialSequence0);
9: Short.toUnsignedInt((short)0);
10: Strand strand0 = bases0.getReverseStrand();
11: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
12: gCSDWindowAlgorithm0.getMinimum();
13: gCSDWindowAlgorithm0.getMinimumInternal();
14: gCSDWindowAlgorithm0.getValueCount();
15: int int1 = 112;
16: float[] floatArray0 = new float[4];
17: floatArray0[0] = (float) 5;
18: floatArray0[1] = (float) 0;
19: floatArray0[2] = (float) 1;
20: Range range0 = null;
21: bases0.getSubSequenceC((Range) null, (-3714));
22: gCSDWindowAlgorithm0.getAverage();
23: StringVector stringVector0 = new StringVector();
24: strand0.getMatchingCodons(range0, stringVector0);
25: floatArray0[3] = (float) bases0.MEDIUM_PRIORITY;
26: gCSDWindowAlgorithm0.getValues(int1, int0, floatArray0);
27: gCSDWindowAlgorithm0.getDefaultMaxWindowSize();
Test case 5
1: SimpleEntryGroup simpleEntryGroup0 = new SimpleEntryGroup();
2: FeatureVector featureVector0 = new FeatureVector();
3: FilteredEntryGroup filteredEntryGroup0 = new FilteredEntryGroup(simpleEntryGroup0, featureVector0, "ZJ<J,E}H&A");
4: FeaturePredicateVector featurePredicateVector0 = new FeaturePredicateVector();
5: FeaturePredicateConjunction featurePredicateConjunction0 = new FeaturePredicateConjunction(featurePredicateVector0, 0);
6: String string0 = "\"{ZFe2t";
7: FilteredEntryGroup filteredEntryGroup1 = new FilteredEntryGroup(filteredEntryGroup0, featurePredicateConjunction0, string0);
8: Bases bases0 = filteredEntryGroup1.getBases();
9: Strand strand0 = bases0.getForwardStrand();
10: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
11: gCSDWindowAlgorithm0.getDefaultStepSize(strand0.REVERSE);
Test case 6
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(" DZ]YGB");
2: Bases bases0 = new Bases(emblStreamSequence0);
3: bases0.getAverageGCPercent();
4: bases0.getACount();
5: Strand strand0 = bases0.getForwardStrand();
6: emblStreamSequence0.copy();
7: emblStreamSequence0.copy();
8: Bases.reverseComplement("internal error - unexpected exception: ");
9: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
10: gCSDWindowAlgorithm0.getDefaultWindowSize();
11: gCSDWindowAlgorithm0.setRevCompDisplay(true);
12: gCSDWindowAlgorithm0.setUserMaxMin(true);
13: gCSDWindowAlgorithm0.getMinimumInternal();
14: Integer integer0 = gCSDWindowAlgorithm0.getDefaultMaxWindowSize();
15: assertEquals(5000, (int)integer0);
16:
17: emblStreamSequence0.getSubSequence(1000, (-708));
18: Range range0 = new Range(0);
19: range0.copy();
20: strand0.getRawSubSequence(range0);
21: gCSDWindowAlgorithm0.getMaximumInternal();
22: Float float0 = gCSDWindowAlgorithm0.getMaximumInternal();
23: assertEquals(100.0F, (float)float0, 0.01F);
24:
25: gCSDWindowAlgorithm0.getMinimumInternal();
26: gCSDWindowAlgorithm0.getMinimumInternal();
27: Integer integer1 = gCSDWindowAlgorithm0.getDefaultWindowSize();
28: assertEquals(1000, (int)integer1);
29:
30: Float float1 = gCSDWindowAlgorithm0.getMinimumInternal();
31: assertEquals(0.0F, (float)float1, 0.01F);
32:
33: gCSDWindowAlgorithm0.getAverage();
34: float[] floatArray0 = new float[3];
35: floatArray0[0] = (float) (-5);
36: floatArray0[1] = (float) 1;
37: floatArray0[2] = (float) 5;
38: gCSDWindowAlgorithm0.getValues(2, 520, floatArray0);
39: assertFalse(gCSDWindowAlgorithm0.scalingFlag());
Test case 7
1: uk.ac.sanger.artemis.Feature feature0 = new uk.ac.sanger.artemis.Feature((Feature) null);
2: int int0 = 49;
3: Range range0 = new Range(int0);
4: FeatureSegment featureSegment0 = new FeatureSegment(feature0, range0);
5: Marker marker0 = featureSegment0.getEnd();
6: Strand strand0 = marker0.getStrand();
7: strand0.getRawPosition(marker0.LISTENER_PRIORITY);
8: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
9: gCSDWindowAlgorithm0.getDefaultMinWindowSize();
10: gCSDWindowAlgorithm0.getMinimumInternal();
11: int int1 = (-984);
12: range0.change(featureSegment0.REVERSE_STRAND, int1);
13: gCSDWindowAlgorithm0.getDefaultMaxWindowSize();
14: gCSDWindowAlgorithm0.getAverage();
15: gCSDWindowAlgorithm0.getAverage();
16: gCSDWindowAlgorithm0.getValueCount();
17: feature0.getFirstCodingBaseMarker();
18: int int2 = 1861;
19: gCSDWindowAlgorithm0.getDefaultStepSize(int2);
20: int int3 = 0;
21: gCSDWindowAlgorithm0.getDefaultStepSize(int3);
22: int int4 = 0;
23: gCSDWindowAlgorithm0.getDefaultStepSize(int4);
Test case 8
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("G)", "G)");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
5: gCSDWindowAlgorithm0.setUserMin((-5));
6: float[] floatArray0 = new float[0];
7: gCSDWindowAlgorithm0.getValues((-3462), 5000, floatArray0);
Test case 9
1: Bases bases0 = new Bases((Sequence) null);
2: Strand strand0 = bases0.getForwardStrand();
3: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
4: float[] floatArray0 = new float[9];
5: floatArray0[0] = (float) 2;
6: floatArray0[1] = (float) 1358;
7: floatArray0[2] = (float) 0;
8: floatArray0[3] = (float) 1358;
9: floatArray0[4] = (float) 1358;
10: floatArray0[5] = (float) (-1);
11: floatArray0[6] = (float) 5;
12: floatArray0[7] = (float) 5;
13: floatArray0[8] = 0.0F;
14: gCSDWindowAlgorithm0.getValues((-1), 1358, floatArray0);
Test case 10
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("'K", "'K");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
5: gCSDWindowAlgorithm0.getDefaultStepSize((-1676));
6: gCSDWindowAlgorithm0.getAverage();
Test case 11
1: float[] floatArray0 = new float[7];
2: floatArray0[0] = (float) 513;
3: floatArray0[1] = (float) 843;
4: floatArray0[2] = (float) 513;
5: floatArray0[3] = (float) 513;
6: floatArray0[5] = (float) 843;
7: floatArray0[6] = (float) 513;
8: StringReader stringReader0 = new StringReader("b_WV");
9: LinePushBackReader linePushBackReader0 = new LinePushBackReader(stringReader0);
10: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(linePushBackReader0);
11: Bases bases0 = new Bases(emblStreamSequence0);
12: Strand strand0 = bases0.getReverseStrand();
13: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
14: gCSDWindowAlgorithm0.getAverage();
Source Code
1: No source found for uk.ac.sanger.artemis.plot.GCSDWindowAlgorithm
EvoSuite Parameters
- TARGET_CLASS: uk.ac.sanger.artemis.plot.GCSDWindowAlgorithm
- Size: 11
- Length: 195
- criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
- Coverage: 0.7215205044673212
- BranchCoverage: 0.6153846153846154
- MethodCoverage: 1.0
- OutputCoverage: 0.35135135135135137
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