Test case 1
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("a[7]Wq)P!pnxA[ZO");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: iCDIAlgorithm0.getValueCount();
Test case 2
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("}(MXB1skCzi.Ep");
2: Bases bases0 = new Bases(emblStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: Float float0 = iCDIAlgorithm0.getMaximumInternal();
6: assertEquals("Reverse Intrinsic Codon Deviation Index", iCDIAlgorithm0.getAlgorithmName());
7: assertTrue(iCDIAlgorithm0.scalingFlag());
8: assertEquals(1000.0F, (float)float0, 0.01F);
Test case 3
1: Bases bases0 = new Bases((Sequence) null);
2: Strand strand0 = bases0.getForwardStrand();
3: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
4: Float float0 = iCDIAlgorithm0.getMinimumInternal();
5: assertEquals(0.0F, (float)float0, 0.01F);
6: assertEquals("Intrinsic Codon Deviation Index", iCDIAlgorithm0.getAlgorithmName());
7: assertTrue(iCDIAlgorithm0.scalingFlag());
Test case 4
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("I['mJL5<tVgngv/]-B7", "I['mJL5<tVgngv/]-B7");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: iCDIAlgorithm0.getAverage();
6: assertEquals("Reverse Intrinsic Codon Deviation Index", iCDIAlgorithm0.getAlgorithmName());
7: assertTrue(iCDIAlgorithm0.scalingFlag());
Test case 5
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("I['mJL5<tVgngv/]-B7", "I['mJL5<tVgngv/]-B7");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: iCDIAlgorithm0.getValues(0, 2, (float[]) null);
Test case 6
1: Bases bases0 = new Bases((Sequence) null);
2: Strand strand0 = bases0.getForwardStrand();
3: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
4: float[] floatArray0 = new float[9];
5: iCDIAlgorithm0.getValues(2, 0, floatArray0);
Test case 7
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("N~LU@6x$/1C(3Ne");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: float[] floatArray0 = new float[5];
6: iCDIAlgorithm0.getValues(2, 627, floatArray0);
7: assertTrue(iCDIAlgorithm0.scalingFlag());
8: assertEquals("Reverse Intrinsic Codon Deviation Index", iCDIAlgorithm0.getAlgorithmName());
Test case 8
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("a[7]Wq)P!pnxA[ZO");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: Integer integer0 = iCDIAlgorithm0.getDefaultWindowSize();
6: assertNotNull(integer0);
7: assertEquals(500, (int)integer0);
8: assertTrue(iCDIAlgorithm0.scalingFlag());
9: assertEquals("Intrinsic Codon Deviation Index", iCDIAlgorithm0.getAlgorithmName());
Test case 9
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("I['mJL5<tVgngv/]-B7", "I['mJL5<tVgngv/]-B7");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: Integer integer0 = iCDIAlgorithm0.getDefaultMaxWindowSize();
6: assertEquals("Reverse Intrinsic Codon Deviation Index", iCDIAlgorithm0.getAlgorithmName());
7: assertTrue(iCDIAlgorithm0.scalingFlag());
8: assertNotNull(integer0);
9: assertEquals(5000, (int)integer0);
Test case 10
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("a[7]Wq)P!pnxA[ZO");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: Integer integer0 = iCDIAlgorithm0.getDefaultMinWindowSize();
6: assertTrue(iCDIAlgorithm0.scalingFlag());
7: assertEquals("Intrinsic Codon Deviation Index", iCDIAlgorithm0.getAlgorithmName());
8: assertNotNull(integer0);
9: assertEquals(24, (int)integer0);
Test case 11
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("}(MXB1skCzi.Ep");
2: Bases bases0 = new Bases(emblStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: Integer integer0 = iCDIAlgorithm0.getDefaultStepSize((-2046));
6: assertEquals("Reverse Intrinsic Codon Deviation Index", iCDIAlgorithm0.getAlgorithmName());
7: assertTrue(iCDIAlgorithm0.scalingFlag());
8: assertNull(integer0);
Test case 12
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("a[7]Wq)P!pnxA[ZO");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
5: Integer integer0 = iCDIAlgorithm0.getDefaultStepSize(52);
6: assertNotNull(integer0);
7: assertEquals(24, (int)integer0);
8: assertTrue(iCDIAlgorithm0.scalingFlag());
9: assertEquals("Intrinsic Codon Deviation Index", iCDIAlgorithm0.getAlgorithmName());
Test case 13
1: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm((Strand) null);
Source Code
1: No source found for uk.ac.sanger.artemis.plot.ICDIAlgorithm
EvoSuite Parameters
- TARGET_CLASS: uk.ac.sanger.artemis.plot.ICDIAlgorithm
- Size: 13
- Length: 61
- criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
- Coverage: 0.6056241785692249
- BranchCoverage: 0.6447368421052632
- MethodCoverage: 0.9090909090909091
- OutputCoverage: 0.2905405405405405
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