insertFeature(Feature) |  | 0% |  | 0% | 5 | 5 | 73 | 73 | 1 | 1 |
getFeatureQuery(String, int, int, CvTerm) |  | 0% |  | 0% | 19 | 19 | 86 | 86 | 1 | 1 |
getFeatureCvTermsByFeature(Feature) |  | 0% |  | 0% | 14 | 14 | 74 | 74 | 1 | 1 |
insertFeatureDbXRef(FeatureDbXRef) |  | 0% |  | 0% | 3 | 3 | 34 | 34 | 1 | 1 |
getAllFeatureSynonymsAsFeature() |  | 0% |  | 0% | 7 | 7 | 41 | 41 | 1 | 1 |
updateFeatureResidues(FeatureForUpdatingResidues) |  | 0% |  | 0% | 3 | 3 | 25 | 25 | 1 | 1 |
insertFeatureAlias(FeatureSynonym) |  | 0% |  | 0% | 2 | 2 | 24 | 24 | 1 | 1 |
updateFeatureRelationship(FeatureRelationship) |  | 0% | | n/a | 1 | 1 | 22 | 22 | 1 | 1 |
getFeatureDbXRefsByFeatureUniquename(String) |  | 0% |  | 0% | 3 | 3 | 27 | 27 | 1 | 1 |
getFeatureSynonymsByFeatureUniquename(String) |  | 0% |  | 0% | 3 | 3 | 28 | 28 | 1 | 1 |
deleteFeatureProp(FeatureProp) |  | 0% |  | 0% | 4 | 4 | 18 | 18 | 1 | 1 |
insertFeatureProp(FeatureProp) |  | 0% | | n/a | 1 | 1 | 17 | 17 | 1 | 1 |
getFeatureCvTermDbXRefByFeature(Feature) |  | 0% |  | 0% | 4 | 4 | 26 | 26 | 1 | 1 |
getPubDbXRef() |  | 0% |  | 0% | 2 | 2 | 27 | 27 | 1 | 1 |
getSynonymByNameAndCvTerm(String, CvTerm) |  | 0% |  | 0% | 3 | 3 | 17 | 17 | 1 | 1 |
updateFeature(Feature) |  | 0% |  | 0% | 5 | 5 | 22 | 22 | 1 | 1 |
deleteFeatureSynonym(FeatureSynonym) |  | 0% |  | 0% | 2 | 2 | 18 | 18 | 1 | 1 |
insertFeatureCvTerm(FeatureCvTerm) |  | 0% |  | 0% | 3 | 3 | 18 | 18 | 1 | 1 |
getFeatureCvTermPubByFeature(Feature) |  | 0% |  | 0% | 4 | 4 | 21 | 21 | 1 | 1 |
getResidueFeatures() |  | 0% |  | 0% | 2 | 2 | 19 | 19 | 1 | 1 |
getCvTerms() |  | 0% |  | 0% | 2 | 2 | 20 | 20 | 1 | 1 |
appendToLogFile(String, String) |  | 0% |  | 0% | 5 | 5 | 15 | 15 | 1 | 1 |
getOrganisms() |  | 0% |  | 0% | 2 | 2 | 19 | 19 | 1 | 1 |
updateFeatureLoc(FeatureLoc) |  | 0% |  | 0% | 2 | 2 | 16 | 16 | 1 | 1 |
getResidueType(String) |  | 0% |  | 0% | 4 | 4 | 14 | 14 | 1 | 1 |
insertPub(Pub) |  | 0% |  | 0% | 3 | 3 | 13 | 13 | 1 | 1 |
insertFeatureCvTermProp(FeatureCvTermProp) |  | 0% | | n/a | 1 | 1 | 12 | 12 | 1 | 1 |
getDbXRefId(DbXRef) |  | 0% | | n/a | 1 | 1 | 11 | 11 | 1 | 1 |
insertDbXRef(DbXRef) |  | 0% | | n/a | 1 | 1 | 11 | 11 | 1 | 1 |
updateFeatureProp(FeatureProp) |  | 0% | | n/a | 1 | 1 | 12 | 12 | 1 | 1 |
JdbcDAO(String, JPasswordField) |  | 0% |  | 0% | 3 | 3 | 10 | 10 | 1 | 1 |
deleteFeatureDbXRef(FeatureDbXRef) |  | 0% | | n/a | 1 | 1 | 10 | 10 | 1 | 1 |
getDbId(Db) |  | 0% | | n/a | 1 | 1 | 10 | 10 | 1 | 1 |
insertFeatureCvTermDbXRef(FeatureCvTermDbXRef) |  | 0% | | n/a | 1 | 1 | 10 | 10 | 1 | 1 |
insertFeatureCvTermPub(FeatureCvTermPub) |  | 0% | | n/a | 1 | 1 | 10 | 10 | 1 | 1 |
getPubByUniqueName(Pub) |  | 0% | | n/a | 1 | 1 | 10 | 10 | 1 | 1 |
delete(Object) |  | 0% |  | 0% | 6 | 6 | 11 | 11 | 1 | 1 |
merge(Object) |  | 0% |  | 0% | 6 | 6 | 11 | 11 | 1 | 1 |
persist(Object) |  | 0% |  | 0% | 6 | 6 | 11 | 11 | 1 | 1 |
getCurrval(String) |  | 0% | | n/a | 1 | 1 | 10 | 10 | 1 | 1 |
getSchema() |  | 0% |  | 0% | 2 | 2 | 11 | 11 | 1 | 1 |
deleteFeature(Feature) |  | 0% | | n/a | 1 | 1 | 7 | 7 | 1 | 1 |
deleteFeatureCvTerm(FeatureCvTerm) |  | 0% | | n/a | 1 | 1 | 8 | 8 | 1 | 1 |
getFeatureByUniqueName(String, String) |  | 0% | | n/a | 1 | 1 | 7 | 7 | 1 | 1 |
getLazyFeature(Feature) |  | 0% |  | 0% | 3 | 3 | 6 | 6 | 1 | 1 |
getFeaturesByAnyCurrentName(String) |  | 0% | | n/a | 1 | 1 | 3 | 3 | 1 | 1 |
getFeatureById(int) |  | 0% | | n/a | 1 | 1 | 3 | 3 | 1 | 1 |
getFeaturesByLocatedOnFeature(Feature) |  | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 |
getFeaturesByUniqueName(String) |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getDbs() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getOrganismsContainingSrcFeatures() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getLazyFeatureNoResiduesById(Integer) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getClustersByFeatureIds(List) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureDbXRefsByFeatureId(List) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeaturePropByFeatureIds(List) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeaturesByListOfIds(List) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureDbXRefsBySrcFeature(Feature) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureSynonymsBySrcFeature(Feature) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureSynonymsByFeatureIds(List) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureLocsByFeatureId(int) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureLocsBySrcFeatureId(int) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureLocsByListOfIds(Collection) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getResiduesByUniqueName(String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeaturePubsBySrcFeature(Feature) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeaturePubsByFeature(Feature) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getSimilarityMatches(Integer) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getSimilarityMatchesByFeatureIds(List) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureCvTermDbXRefBySrcFeature(Feature) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureCvTermPubBySrcFeature(Feature) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureCvTermsBySrcFeature(Feature) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getResidueFeatures(Integer) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getResidueFeaturesByOrganismCommonName(String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getParentFeaturesByChildFeatureIds(List) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeaturesByAnyName(String, String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeaturesByRange(int, int, int, Feature, String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureCvTermByFeatureAndCvTerm(Feature, CvTerm, boolean) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureSynonymsByFeatureAndSynonym(Feature, Synonym) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureSynonymsByFeatureUniquename(Feature, Synonym) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeatureByGO(String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeaturesByAnyNameAndOrganism(String, List, String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeaturesByCvTermName(String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getTopLevelFeatures() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getProducts() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getCvTermByNameInCv(String, Cv) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getAllCvs() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getCvTermByNameAndCvName(String, String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getCvTermById(int) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getOrganismByCommonName(String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getGraph(Integer) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getGraphs(Integer) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getFeaturesByUniqueNames(List) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
getTableColumns(String) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
insertPubDbXRef(PubDbXRef) | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |