IOUtils

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total1,801 of 3,41947%250 of 43842%1742513236631432
countVariants(VCFview, FeatureVector)3440%360%1919484811
makeFeature(VCFRecord, String, VCFview, FeatureVector, Bases, Entry, Key, AbstractVCFReader, int)1610%160%99282811
exportFasta(VCFview, FeatureVector, boolean, Writer)15723259%333350%2934267701
createFeatures(VCFview, EntryGroup)1260%100%66262611
count(VCFRecord, int[], FeatureVector, AbstractVCFReader, int, VCFview)980%140%88171711
exportFastaByRange(VCFview, Selection, boolean, Writer)9712957%11945%911195201
getBasesInRegion(AbstractVCFReader, int, String, int, int, String, FeatureVector, VCFview, boolean, boolean, boolean)856844%13735%811102601
getFile(String, int, String, JComponent)810%100%66161611
getAllBasesInRegion(AbstractVCFReader, int, int, int, String, FeatureVector, VCFview, boolean, boolean, boolean)761920%1516%89131601
storeVCFRecords(VCFview, HashMap[], int, int)704338%15525%811121901
export(Map, List, VCFview)660%40%33101011
writeVariants(VCFview, HashMap[], Writer[], FeatureVector, int, int, int, Bases, int)5628683%184270%1531107501
exportVariantFasta(VCFview)530%20%22171711
writeOrView(AbstractVCFReader, Feature, Writer, StringBuffer, String)513339%4450%3581701
makeFeatures(AbstractVCFReader, int, String, int, int, FeatureVector, VCFview, Bases, Entry)490%20%228811
getBaseDirectoryFromEntry(Entry)480%100%66121211
maskSites(int, int, int, boolean, String)400%40%337711
writeVCF(Map, String, int, VCFview, FeatureVector, int)290%20%229911
getSeqsVariation(VCFRecord, String, int, boolean, boolean)2722689%103678%102455001
getFeatures(FeaturePredicate, EntryGroup)230%40%338811
isSNPorNonVariant(VCFRecord)180%60%441111
writeOrView(Writer, StringBuffer, String, StringBuffer, int)17832%3125%234601
exportVariantFasta(VCFview, PrintWriter, int, FeatureVector, Bases)1324094%11794%11044101
isBCF(String)94282%2466%2431401
loadRecords(HashMap, AbstractVCFReader, String, int, int, int)42184%1375%131501
IOUtils()0%n/a111111
writeOrViewRange(AbstractVCFReader, int, int, int, Writer, StringBuffer, MarkerRange, Bases, String, VCFview, EntryGroup, boolean, boolean)126100%1990%1602501
writeSequence(Writer, StringBuffer, String, int)62100%2675%2501201
getHeader(AbstractVCFReader, MarkerRange, String, int, int)40100%1583%140801
wrapString(String, StringBuffer)31100%4100%030701
getBase(String, boolean)7100%2100%020301
static {...}5100%n/a010201