IndexedGFFDocumentEntry

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total2,589 of 2,6090%340 of 3400%2182205815854850
combineGeneFeatures(FeatureVector)3050%520%2727707011
mergeFeatures(List, List, String)2940%220%1212666611
mergeGtfFeatures(FeatureVector, String)1850%140%88383811
IndexedGFFDocumentEntry(Document)1710%100%66383811
indexOf(Feature)1670%280%1515353511
getFeaturesInRange(IndexedGFFDocumentEntry.IndexContig, Range, FeatureVector)1510%140%88303011
getFeatureAtIndex(int)1440%180%1010323211
getContigsInRange(Range)1170%240%1313171711
combineChadoExons(ChadoCanonicalGene, FeatureVector)1040%120%77252511
contains(Feature, String, String, String, String)990%340%1818212111
mergeQualifiers(QualifierVector, boolean)980%180%1010232311
checkOffset()910%120%77151511
iterate(IndexedGFFDocumentEntry.IndexContig, int, int, TabixReader.Iterator, FeatureVector)890%160%99181811
initContig()810%120%77171711
getGffInArtemisCoordinates(String, StringVector, IndexedGFFDocumentEntry.IndexContig)750%80%55151511
getFeatureCount()750%100%66191911
getFeaturesInRange(Range)630%80%55191911
truncate(Range, Entry)400%20%22121211
getListOfContigs()380%60%447711
contains(Feature, FeatureVector)350%40%338811
isTranscript(Key)210%60%446611
getStartInArtemisCoords(StringVector, IndexedGFFDocumentEntry.IndexContig)190%20%224411
getEndInArtemisCoords(StringVector, IndexedGFFDocumentEntry.IndexContig)190%20%224411
getCoordInContigCoords(int, IndexedGFFDocumentEntry.IndexContig)180%40%335511
updateReference(String, boolean)130%n/a115511
save(Document)120%n/a117711
contains(Feature)90%20%221111
setName(String)50%n/a112211
features()50%n/a111111
getAllFeatures()50%n/a111111
save()50%n/a112211
setEntryGroup(EntryGroup)40%n/a112211
getName()30%n/a111111
getDocument()30%n/a111111
getEntryInformation()30%n/a111111
hasUnsavedChanges()0%n/a111111
isReadOnly()0%n/a111111
getHeaderText()0%n/a111111
setHeaderText(String)0%n/a111111
createFeature(Key, Location, QualifierVector)0%n/a111111
add(Feature)0%n/a111111
forcedAdd(Feature)0%n/a111111
remove(Feature)0%n/a111111
getSequence()0%n/a111111
getLastChangeTime()0%n/a111111
dispose()0%n/a111111
writeToStream(Writer)0%n/a111111
setDirtyFlag()0%n/a111111
isIndexed(File)16100%n/a010201
static {...}4100%n/a010201