Test case 1
1: GAMEFormat gAMEFormat0 = new GAMEFormat();
2: assertEquals("GAME1.2", gAMEFormat0.getDefaultFormat());
Test case 2
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("J");
2: RawStreamSequence rawStreamSequence0 = new RawStreamSequence(emblStreamSequence0);
3: Bases bases0 = new Bases(rawStreamSequence0);
4: emblStreamSequence0.forceReset();
5: Strand strand0 = bases0.getForwardStrand();
6: rawStreamSequence0.setFromChar(bases0.letter_index);
7: emblStreamSequence0.forceReset();
8: emblStreamSequence0.setHeader("J");
9: emblStreamSequence0.setFromChar(bases0.letter_index);
10: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand0);
11: mRIAlgorithm0.setAlgorithmName("J");
12: mRIAlgorithm0.getAverage();
13: mRIAlgorithm0.getMaximum();
14: mRIAlgorithm0.getDefaultWindowSize();
15: Range range0 = new Range(2);
16: strand0.getStopOrStartCodons(range0, (StringVector) null);
17: float[] floatArray0 = new float[5];
18: floatArray0[0] = (float) 2;
19: floatArray0[1] = (float) 0;
20: System.setCurrentTimeMillis(2297L);
21: floatArray0[2] = (float) 5;
22: floatArray0[3] = (float) 5;
23: floatArray0[4] = (float) 0;
24: mRIAlgorithm0.getValues(1, 108, floatArray0);
Test case 3
1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("uLZ");
2: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("uLZ", "uLZ");
3: Bases bases0 = new Bases(fastaStreamSequence0);
4: bases0.addBases(23, 23, "b<f9o49B|E@;6FiHl?Z");
5: Strand strand0 = bases0.getForwardStrand();
6: Bases bases1 = strand0.getBases();
7: Strand strand1 = bases1.getReverseStrand();
8: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand1);
9: Integer integer0 = mRIAlgorithm0.getDefaultMinWindowSize();
10: assertNotNull(integer0);
11: assertEquals(24, (int)integer0);
12:
13: mRIAlgorithm0.getDefaultMaxWindowSize();
14: mRIAlgorithm0.getDefaultWindowSize();
15: bases1.getComplementPosition(1);
16: Integer integer1 = mRIAlgorithm0.getDefaultMaxWindowSize();
17: assertEquals(5000, (int)integer1);
18: assertNotNull(integer1);
19:
20: Integer integer2 = mRIAlgorithm0.getDefaultStepSize(5);
21: assertNull(integer2);
22:
23: Integer integer3 = mRIAlgorithm0.getDefaultWindowSize();
24: assertEquals(500, (int)integer3);
25:
26: float[] floatArray0 = new float[6];
27: floatArray0[0] = (float) 5;
28: floatArray0[1] = 687.369F;
29: floatArray0[2] = (float) 0;
30: floatArray0[3] = (float) 0;
31: floatArray0[4] = (float) 0;
32: floatArray0[5] = (float) 2;
33: mRIAlgorithm0.getValues(85, 1775, floatArray0);
34: mRIAlgorithm0.getDefaultStepSize((-5));
35: int int0 = mRIAlgorithm0.getValueCount();
36: assertEquals(3, int0);
37:
38: mRIAlgorithm0.getDefaultStepSize((-5));
39: assertEquals("Reverse Mutational Response Index", mRIAlgorithm0.getAlgorithmName());
40: assertTrue(mRIAlgorithm0.scalingFlag());
Test case 4
1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("uLZ");
2: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("uLZ", "uLZ");
3: Bases bases0 = new Bases(fastaStreamSequence0);
4: bases0.addBases(23, 23, "b<f9o49B|E@;6FiHl?Z");
5: Strand strand0 = bases0.getForwardStrand();
6: Bases bases1 = strand0.getBases();
7: Strand strand1 = bases1.getReverseStrand();
8: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand1);
9: Integer integer0 = mRIAlgorithm0.getDefaultMinWindowSize();
10: assertNotNull(integer0);
11: assertEquals(24, (int)integer0);
12:
13: mRIAlgorithm0.getDefaultMaxWindowSize();
14: mRIAlgorithm0.getDefaultWindowSize();
15: bases1.getComplementPosition(1);
16: Integer integer1 = mRIAlgorithm0.getDefaultMaxWindowSize();
17: assertEquals(5000, (int)integer1);
18:
19: Integer integer2 = mRIAlgorithm0.getDefaultStepSize(5);
20: assertNull(integer2);
21:
22: Integer integer3 = mRIAlgorithm0.getDefaultWindowSize();
23: assertNotNull(integer3);
24: assertEquals(500, (int)integer3);
25:
26: float[] floatArray0 = new float[6];
27: floatArray0[0] = (float) 5;
28: floatArray0[1] = 687.369F;
29: floatArray0[2] = (float) 0;
30: floatArray0[3] = (float) 0;
31: floatArray0[4] = (float) 0;
32: floatArray0[5] = (float) 2;
33: mRIAlgorithm0.getValues(85, 1775, floatArray0);
34: mRIAlgorithm0.getDefaultStepSize((-5));
35: int int0 = mRIAlgorithm0.getValueCount();
36: assertEquals(3, int0);
37:
38: mRIAlgorithm0.getDefaultStepSize((-5));
39: assertEquals("Reverse Mutational Response Index", mRIAlgorithm0.getAlgorithmName());
40: assertTrue(mRIAlgorithm0.scalingFlag());
Test case 5
1: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm((Strand) null);
Test case 6
1: BioJavaSequence bioJavaSequence0 = new BioJavaSequence((SymbolList) null);
2: Bases bases0 = new Bases(bioJavaSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand0);
5: mRIAlgorithm0.getAverage();
6: mRIAlgorithm0.getMaximumInternal();
Test case 7
1: Bases bases0 = new Bases((Sequence) null);
2: Strand strand0 = bases0.getForwardStrand();
3: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand0);
4: mRIAlgorithm0.getMinimumInternal();
Test case 8
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("J");
2: RawStreamSequence rawStreamSequence0 = new RawStreamSequence(emblStreamSequence0);
3: Bases bases0 = new Bases(rawStreamSequence0);
4: emblStreamSequence0.forceReset();
5: Strand strand0 = bases0.getReverseStrand();
6: rawStreamSequence0.setFromChar(bases0.letter_index);
7: emblStreamSequence0.forceReset();
8: emblStreamSequence0.setFromChar(bases0.letter_index);
9: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand0);
10: mRIAlgorithm0.setAlgorithmName("J");
11: mRIAlgorithm0.getAverage();
12: mRIAlgorithm0.getAverage();
13: Integer integer0 = mRIAlgorithm0.getDefaultWindowSize();
14: float[] floatArray0 = new float[5];
15: floatArray0[0] = (float) 108;
16: floatArray0[1] = (float) 0;
17: floatArray0[2] = (float) 5;
18: floatArray0[3] = (float) 5;
19: floatArray0[4] = (float) 0;
20: mRIAlgorithm0.getValues(5, 108, floatArray0);
21: Float float0 = mRIAlgorithm0.getMaximumInternal();
22: Color[] colorArray0 = new Color[7];
23: Box box0 = Box.createVerticalBox();
24: Color color0 = box0.getBackground();
25: colorArray0[1] = null;
26: Object[][] objectArray0 = new Object[5][3];
27: objectArray0[0] = (Object[]) colorArray0;
28: objectArray0[1] = (Object[]) colorArray0;
29: Object[] objectArray1 = new Object[6];
30: objectArray1[1] = (Object) integer0;
31: objectArray1[2] = (Object) integer0;
32: objectArray1[3] = (Object) color0;
33: objectArray1[4] = (Object) null;
34: objectArray1[5] = (Object) box0;
35: objectArray0[2] = objectArray1;
36: objectArray0[3] = (Object[]) colorArray0;
37: objectArray0[4] = (Object[]) colorArray0;
38: Object[] objectArray2 = new Object[9];
39: objectArray2[0] = (Object) floatArray0;
40: objectArray2[1] = (Object) emblStreamSequence0;
41: objectArray2[2] = (Object) box0;
42: objectArray2[3] = (Object) mRIAlgorithm0;
43: Object object0 = ColorSpaceHintKey.VALUE_COLORSPACE_ALPHA_CONVERT;
44: objectArray2[4] = object0;
45: objectArray2[6] = (Object) float0;
46: objectArray2[7] = (Object) "J";
47: objectArray2[8] = (Object) rawStreamSequence0;
48: DefaultTableColumnModel defaultTableColumnModel0 = new DefaultTableColumnModel();
49: defaultTableColumnModel0.getSelectionModel();
50: Color color1 = Color.RED;
51: colorArray0[3] = color1;
52: SystemColor systemColor0 = SystemColor.textText;
53: colorArray0[4] = (Color) systemColor0;
54: Color color2 = Color.pink;
55: colorArray0[5] = color2;
56: DefaultTreeCellRenderer defaultTreeCellRenderer0 = new DefaultTreeCellRenderer();
57: mRIAlgorithm0.drawLegend((Graphics) null, 1, 0, colorArray0);
Test case 9
1: Bases bases0 = new Bases((Sequence) null);
2: Strand strand0 = bases0.getForwardStrand();
3: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand0);
4: mRIAlgorithm0.getDefaultMaxWindowSize();
5: mRIAlgorithm0.getDefaultStepSize((-5));
6: mRIAlgorithm0.getValues(0, (-1868), (float[]) null);
Test case 10
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("J");
2: RawStreamSequence rawStreamSequence0 = new RawStreamSequence(emblStreamSequence0);
3: Bases bases0 = new Bases(rawStreamSequence0);
4: emblStreamSequence0.forceReset();
5: Strand strand0 = bases0.getReverseStrand();
6: rawStreamSequence0.setFromChar(bases0.letter_index);
7: emblStreamSequence0.forceReset();
8: emblStreamSequence0.setFromChar(bases0.letter_index);
9: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand0);
10: mRIAlgorithm0.setAlgorithmName("J");
11: mRIAlgorithm0.getAverage();
12: mRIAlgorithm0.getAverage();
13: mRIAlgorithm0.getDefaultWindowSize();
14: float[] floatArray0 = new float[5];
15: floatArray0[0] = (float) 2;
16: floatArray0[1] = (float) 0;
17: floatArray0[2] = (float) 5;
18: floatArray0[3] = (float) 5;
19: floatArray0[4] = (float) 0;
20: mRIAlgorithm0.getValues(1, 108, floatArray0);
Test case 11
1: Bases bases0 = new Bases((Sequence) null);
2: FileSystemHandling.createFolder((EvoSuiteFile) null);
3: FileSystemHandling.appendStringToFile((EvoSuiteFile) null, "1");
4: Strand strand0 = bases0.getReverseStrand();
5: Bases bases1 = strand0.getBases();
6: Strand strand1 = bases1.getForwardStrand();
7: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand1);
8: mRIAlgorithm0.getDefaultMinWindowSize();
9: mRIAlgorithm0.getMaximumInternal();
10: mRIAlgorithm0.getDefaultWindowSize();
11: float[] floatArray0 = new float[9];
12: floatArray0[0] = (float) (-5);
13: floatArray0[1] = (float) 2;
14: floatArray0[2] = (float) (-5);
15: floatArray0[3] = (float) 0;
16: floatArray0[4] = (float) 2;
17: floatArray0[5] = (float) 0;
18: floatArray0[6] = (float) 1;
19: floatArray0[7] = (float) (-5);
20: floatArray0[8] = (float) 0;
21: mRIAlgorithm0.getValues((-1588), (-5), floatArray0);
Test case 12
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("uWMFz");
2: Bases bases0 = new Bases(emblStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand0);
5: mRIAlgorithm0.getDefaultWindowSize();
6: mRIAlgorithm0.getDefaultMaxWindowSize();
7: mRIAlgorithm0.getDefaultStepSize(10);
Test case 13
1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("uLZ");
2: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("uLZ", "uLZ");
3: Bases bases0 = new Bases(fastaStreamSequence0);
4: bases0.addBases(23, 23, "b<f9o49B|E@;6FiHl?Z");
5: Strand strand0 = bases0.getForwardStrand();
6: Bases bases1 = strand0.getBases();
7: Strand strand1 = bases1.getReverseStrand();
8: MRIAlgorithm mRIAlgorithm0 = new MRIAlgorithm(strand1);
9: mRIAlgorithm0.getDefaultMinWindowSize();
10: mRIAlgorithm0.getDefaultMaxWindowSize();
11: mRIAlgorithm0.getDefaultWindowSize();
12: bases1.getComplementPosition(1);
13: mRIAlgorithm0.getDefaultMaxWindowSize();
14: mRIAlgorithm0.getDefaultStepSize(5);
15: mRIAlgorithm0.getDefaultWindowSize();
16: float[] floatArray0 = new float[6];
17: floatArray0[0] = (float) 5;
18: floatArray0[1] = 687.369F;
19: floatArray0[2] = (float) 0;
20: floatArray0[3] = (float) 0;
21: floatArray0[4] = (float) 0;
22: floatArray0[5] = (float) 2;
23: mRIAlgorithm0.getValues(85, 1775, floatArray0);
24: mRIAlgorithm0.getDefaultStepSize((-5));
25: mRIAlgorithm0.getValueCount();
26: mRIAlgorithm0.getDefaultStepSize((-5));
27: mRIAlgorithm0.getDefaultMaxWindowSize();
28: mRIAlgorithm0.getDefaultStepSize(5209);
29: mRIAlgorithm0.getAverage();
30: mRIAlgorithm0.getDefaultMinWindowSize();
Source Code
1: No source found for uk.ac.sanger.artemis.plot.MRIAlgorithm
EvoSuite Parameters
- TARGET_CLASS: uk.ac.sanger.artemis.plot.MRIAlgorithm
- Size: 13
- Length: 229
- criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
- Coverage: 0.8594138476950977
- BranchCoverage: 0.796875
- MethodCoverage: 1.0
- OutputCoverage: 0.33783783783783783
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