Test case 1
1: SymbolList symbolList0 = DoubleAlphabet.fromArray((double[]) null);
2: BioJavaSequence bioJavaSequence0 = new BioJavaSequence(symbolList0);
3: Bases bases0 = new Bases(bioJavaSequence0);
4: Strand strand0 = bases0.getForwardStrand();
5: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
6: float[] floatArray0 = new float[8];
7: ncAlgorithm0.getValues((-2898), 1, floatArray0);
Test case 2
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("gcC%");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: Float float0 = ncAlgorithm0.getMinimumInternal();
6: assertTrue(ncAlgorithm0.scalingFlag());
7: assertEquals(0.0F, (float)float0, 0.01F);
8: assertEquals("Reverse Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
Test case 3
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("Nc");
2: Bases bases0 = new Bases(emblStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: int int0 = ncAlgorithm0.getValueCount();
6: assertEquals(3, int0);
7: assertTrue(ncAlgorithm0.scalingFlag());
8: assertEquals("Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
Test case 4
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("gcC%");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: ncAlgorithm0.getAverage();
6: assertTrue(ncAlgorithm0.scalingFlag());
7: assertEquals("Reverse Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
Test case 5
1: char[] charArray0 = new char[9];
2: Short short0 = new Short((short)660);
3: Integer integer0 = JLayeredPane.PALETTE_LAYER;
4: PartialSequence partialSequence0 = new PartialSequence(charArray0, 99, 4096, short0, integer0);
5: Bases bases0 = new Bases(partialSequence0);
6: Strand strand0 = bases0.getReverseStrand();
7: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
8: Color[] colorArray0 = new Color[6];
9: ncAlgorithm0.drawLegend((Graphics) null, 4096, 4096, colorArray0);
10: assertTrue(ncAlgorithm0.scalingFlag());
11: assertEquals("Reverse Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
Test case 6
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("gcC%");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: Float float0 = ncAlgorithm0.getMaximumInternal();
6: assertEquals("Reverse Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
7: assertEquals(1.0E7F, (float)float0, 0.01F);
8: assertTrue(ncAlgorithm0.scalingFlag());
Test case 7
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("gcC%");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: float[] floatArray0 = new float[4];
6: ncAlgorithm0.getValues((-5), 2, floatArray0);
7: assertEquals("Reverse Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
8: assertTrue(ncAlgorithm0.scalingFlag());
Test case 8
1: Bases bases0 = new Bases((Sequence) null);
2: Strand strand0 = bases0.getForwardStrand();
3: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
4: Integer integer0 = ncAlgorithm0.getDefaultWindowSize();
5: assertEquals("Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
6: assertNotNull(integer0);
7: assertEquals(500, (int)integer0);
8: assertTrue(ncAlgorithm0.scalingFlag());
Test case 9
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("gcC%");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: Integer integer0 = ncAlgorithm0.getDefaultMaxWindowSize();
6: assertEquals(5000, (int)integer0);
7: assertTrue(ncAlgorithm0.scalingFlag());
8: assertEquals("Reverse Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
9: assertNotNull(integer0);
Test case 10
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("gcC%");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: Integer integer0 = ncAlgorithm0.getDefaultMinWindowSize();
6: assertEquals("Reverse Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
7: assertTrue(ncAlgorithm0.scalingFlag());
8: assertNotNull(integer0);
9: assertEquals(24, (int)integer0);
Test case 11
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("~KL1E\"4?rzM2U9'j<");
2: Bases bases0 = new Bases(emblStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: Integer integer0 = ncAlgorithm0.getDefaultStepSize(2);
6: assertTrue(ncAlgorithm0.scalingFlag());
7: assertNull(integer0);
8: assertEquals("Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
Test case 12
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("gcC%");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: Integer integer0 = ncAlgorithm0.getDefaultStepSize(1638);
6: assertNotNull(integer0);
7: assertEquals(24, (int)integer0);
8: assertTrue(ncAlgorithm0.scalingFlag());
9: assertEquals("Reverse Effective Codon Number(Nc)", ncAlgorithm0.getAlgorithmName());
Test case 13
1: NcAlgorithm ncAlgorithm0 = new NcAlgorithm((Strand) null);
Test case 14
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("~KL1E\"4?rzM2U9'j<");
2: Bases bases0 = new Bases(emblStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: float[] floatArray0 = new float[0];
6: ncAlgorithm0.getValues((-5), 0, floatArray0);
Test case 15
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("gcC%");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: NcAlgorithm ncAlgorithm0 = new NcAlgorithm(strand0);
5: float[] floatArray0 = new float[4];
6: ncAlgorithm0.getValues(1001, 0, floatArray0);
Source Code
1: No source found for uk.ac.sanger.artemis.plot.NcAlgorithm
EvoSuite Parameters
- TARGET_CLASS: uk.ac.sanger.artemis.plot.NcAlgorithm
- Size: 15
- Length: 79
- criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
- Coverage: 0.740854257421687
- BranchCoverage: 0.5576923076923077
- MethodCoverage: 1.0
- OutputCoverage: 0.2905405405405405
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