Test case 1
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("g", "g");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: CSCSAlgorithm cSCSAlgorithm0 = new CSCSAlgorithm(strand0);
5: cSCSAlgorithm0.getAlgorithmShortName();
Test case 2
1: StringReader stringReader0 = new StringReader("7` nrwtm$FM^iy}ql");
2: LinePushBackReader linePushBackReader0 = new LinePushBackReader(stringReader0);
3: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(linePushBackReader0);
4: Bases bases0 = new Bases(emblStreamSequence0);
5: Strand strand0 = bases0.getForwardStrand();
6: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
7: gCSDWindowAlgorithm0.getDefaultWindowSize();
8: assertFalse(gCSDWindowAlgorithm0.isUserMaxMin());
9: assertEquals("GC Content (%) With A 2.5 SD Cutoff", gCSDWindowAlgorithm0.getAlgorithmName());
10: assertEquals(3.4028235E38F, gCSDWindowAlgorithm0.getUserMax(), 0.01F);
11: assertFalse(gCSDWindowAlgorithm0.scalingFlag());
12: assertEquals("sd_gc_content", gCSDWindowAlgorithm0.getAlgorithmShortName());
13: assertEquals(1.4E-45F, gCSDWindowAlgorithm0.getUserMin(), 0.01F);
Test case 3
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("g", "g");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: EntropyAlgorithm entropyAlgorithm0 = new EntropyAlgorithm(strand0);
5: float float0 = entropyAlgorithm0.getUserMax();
6: assertEquals(1.4E-45F, entropyAlgorithm0.getUserMin(), 0.01F);
7: assertEquals("Reverse Informational Entropy", entropyAlgorithm0.getAlgorithmName());
8: assertTrue(entropyAlgorithm0.scalingFlag());
9: assertFalse(entropyAlgorithm0.isUserMaxMin());
10: assertEquals("entropy", entropyAlgorithm0.getAlgorithmShortName());
11: assertEquals(3.4028235E38F, float0, 0.01F);
Test case 4
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("g", "g");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: EntropyAlgorithm entropyAlgorithm0 = new EntropyAlgorithm(strand0);
5: entropyAlgorithm0.getDefaultMinWindowSize();
6: assertFalse(entropyAlgorithm0.isUserMaxMin());
7: assertEquals(3.4028235E38F, entropyAlgorithm0.getUserMax(), 0.01F);
8: assertEquals(1.4E-45F, entropyAlgorithm0.getUserMin(), 0.01F);
9: assertEquals("Reverse Informational Entropy", entropyAlgorithm0.getAlgorithmName());
10: assertEquals("entropy", entropyAlgorithm0.getAlgorithmShortName());
11: assertTrue(entropyAlgorithm0.scalingFlag());
Test case 5
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("g", "g");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: AGWindowAlgorithm aGWindowAlgorithm0 = new AGWindowAlgorithm(strand0);
5: aGWindowAlgorithm0.setUserMaxMin(false);
6: assertEquals("AG Content (%)", aGWindowAlgorithm0.getAlgorithmName());
7: assertEquals(1.4E-45F, aGWindowAlgorithm0.getUserMin(), 0.01F);
8: assertFalse(aGWindowAlgorithm0.isUserMaxMin());
9: assertEquals("ag_content", aGWindowAlgorithm0.getAlgorithmShortName());
10: assertEquals(3.4028235E38F, aGWindowAlgorithm0.getUserMax(), 0.01F);
11: assertTrue(aGWindowAlgorithm0.scalingFlag());
Test case 6
1: StringReader stringReader0 = new StringReader("7` nrwtm$FM^iy}ql");
2: LinePushBackReader linePushBackReader0 = new LinePushBackReader(stringReader0);
3: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(linePushBackReader0);
4: Bases bases0 = new Bases(emblStreamSequence0);
5: Strand strand0 = bases0.getForwardStrand();
6: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
7: gCSDWindowAlgorithm0.setUserMax(5);
8: assertEquals(5.0F, gCSDWindowAlgorithm0.getUserMax(), 0.01F);
Test case 7
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("g", "g");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: AGWindowAlgorithm aGWindowAlgorithm0 = new AGWindowAlgorithm(strand0);
5: boolean boolean0 = aGWindowAlgorithm0.isUserMaxMin();
6: assertEquals("ag_content", aGWindowAlgorithm0.getAlgorithmShortName());
7: assertEquals(1.4E-45F, aGWindowAlgorithm0.getUserMin(), 0.01F);
8: assertTrue(aGWindowAlgorithm0.scalingFlag());
9: assertEquals("AG Content (%)", aGWindowAlgorithm0.getAlgorithmName());
10: assertEquals(3.4028235E38F, aGWindowAlgorithm0.getUserMax(), 0.01F);
11: assertFalse(boolean0);
Test case 8
1: StringReader stringReader0 = new StringReader("7` nrwtm$FM^iy}ql");
2: LinePushBackReader linePushBackReader0 = new LinePushBackReader(stringReader0);
3: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(linePushBackReader0);
4: Bases bases0 = new Bases(emblStreamSequence0);
5: Strand strand0 = bases0.getForwardStrand();
6: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
7: gCSDWindowAlgorithm0.setScalingFlag(true);
8: assertTrue(gCSDWindowAlgorithm0.scalingFlag());
Test case 9
1: HydrophilicityAlgorithm hydrophilicityAlgorithm0 = new HydrophilicityAlgorithm((Feature) null);
2: hydrophilicityAlgorithm0.getMinimumInternal();
3: assertFalse(hydrophilicityAlgorithm0.isUserMaxMin());
4: assertEquals(3.4028235E38F, hydrophilicityAlgorithm0.getUserMax(), 0.01F);
5: assertEquals(1.4E-45F, hydrophilicityAlgorithm0.getUserMin(), 0.01F);
6: assertFalse(hydrophilicityAlgorithm0.scalingFlag());
7: assertEquals("hydrophilicity", hydrophilicityAlgorithm0.getAlgorithmShortName());
8: assertEquals("Hopp-Woods Hydrophilicity", hydrophilicityAlgorithm0.getAlgorithmName());
Test case 10
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("g", "g");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: AGWindowAlgorithm aGWindowAlgorithm0 = new AGWindowAlgorithm(strand0);
5: aGWindowAlgorithm0.getMinimumInternal();
6: assertEquals("AG Content (%)", aGWindowAlgorithm0.getAlgorithmName());
7: assertEquals("ag_content", aGWindowAlgorithm0.getAlgorithmShortName());
8: assertEquals(1.4E-45F, aGWindowAlgorithm0.getUserMin(), 0.01F);
9: assertEquals(3.4028235E38F, aGWindowAlgorithm0.getUserMax(), 0.01F);
10: assertTrue(aGWindowAlgorithm0.scalingFlag());
11: assertFalse(aGWindowAlgorithm0.isUserMaxMin());
Source Code
1: No source found for uk.ac.sanger.artemis.plot.Algorithm
EvoSuite Parameters
- TARGET_CLASS: uk.ac.sanger.artemis.plot.Algorithm
- Size: 10
- Length: 53
- criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
- Coverage: 0.3978276049197187
- BranchCoverage: 0.2608695652173913
- MethodCoverage: 0.35
- OutputCoverage: 0.0821256038647343
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