DatabaseDocument

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total6,117 of 6,2191%730 of 7300%4634641,4431,4539899
chadoToGFF(Feature, String, Hashtable, Hashtable, Hashtable, List, Hashtable, Hashtable, Hashtable, Hashtable, GmodDAO, FeatureLoc, ByteBuffer, boolean)7560%1100%565614914911
commit(Vector, boolean)4440%760%3939999911
appendControlledVocabulary(ByteBuffer, GmodDAO, FeatureCvTerm, List, List, List, boolean)3590%520%2727808011
getGeneFeature(String, List, GmodDAO, boolean)3020%340%1818696911
getInputStream()2840%240%1313595911
constructCvTermString(ByteBuffer, GmodDAO, FeatureCvTerm, List, List, DbXRef, boolean, boolean)2840%540%2828686811
getGff(GmodDAO, Feature)2710%220%1212666611
getFeaturesInRange(Feature, Range, GmodDAO)2070%100%66393911
main(String[])1980%40%33363611
commitChadoTransaction(ChadoTransaction, GmodDAO, Timestamp)1830%400%2121464611
getUpdateResiduesColumnTransactions(ChadoTransaction)1160%180%1010333311
buildGffLineFromId(GmodDAO, int, Hashtable, String, int, ByteBuffer, Feature)1050%40%33252511
checkFeatureTimestamp(String, String, GmodDAO, String, Hashtable, ChadoTransaction)1010%160%99242411
getOrganismsContainingSrcFeatures()1000%n/a11272711
constructExceptionMessage(RuntimeException, Vector, int)990%180%1010181811
adjustChildCoordinates(FeatureLoc, GmodDAO)920%100%66222211
getPolypeptideFeatures(String)840%120%77232311
getSynonymTypeNames(String, GFFStreamFeature)780%80%55202011
getGffDocuments(String, String, String)680%80%55131311
getCdsFeatureLocsByTranscriptName(String)640%100%66181811
reset(String, String)630%60%44141411
checkPubDbXRef(List, int, Pub, FeatureCvTerm)630%80%55131311
getGraphData(int, String)630%40%33232311
DatabaseDocument(String, JPasswordField, String, String, boolean, InputStreamProgressListener)620%40%33212111
DatabaseDocument(String, JPasswordField)600%60%44181811
DatabaseDocument(String, JPasswordField, String, String, ByteBuffer, String)580%40%33202011
getFeatureCvTermDbXRef(GmodDAO, List)580%80%55151511
getFeatureCvTermPub(GmodDAO, List)580%80%55151511
DatabaseDocument(String, JPasswordField, String, String, boolean)550%40%33191911
DatabaseDocument(String, JPasswordField, String, String)520%40%33181811
getCvterms(String, String, boolean)520%100%66131311
getDAOOnly()520%n/a11131311
getCdsFeatureLocsByPeptideName(String)500%60%44141411
getAllFeatureSynonyms(List)490%40%33101011
getFeaturePubs(GmodDAO, List)490%40%33101011
getFeatureCvTermsByFeature(GmodDAO, List)490%40%33101011
getCvtermFromGoId(String)440%100%66111111
getCvTermByCvTermId(int, Feature)430%60%44161611
getCvterms(GmodDAO)420%20%22131311
getPartOfFeatures(String)410%60%44121211
getChadoGeneByAnyCurrentName(String)380%60%44121211
getCvControledCurationNames()370%80%55121211
getOrganismNames()350%60%44111111
getDAO()350%60%448811
getChadoSequence(String)340%n/a117711
getOutputStream()340%20%227711
getUniqueNames(ChadoTransaction)330%80%557711
getName()290%20%226611
getDatabaseNames()280%20%229911
getCvTermByCvAndCvTerm(String, String)260%60%448811
getCvTermByCvPartAndCvTerm(String, String)260%60%448811
indexOfIgnoreCase(String, String, int)250%40%336611
insertCvTerm(CvTerm)240%n/a115511
getCvtermID(String)230%40%337711
getFeatureLoc(List, int)220%40%335511
getChars(byte[])210%20%224411
getGraphs()210%40%335511
DatabaseDocument(DatabaseDocument, String, Feature, Range, InputStreamProgressListener)200%n/a116611
getCvTermByCvTermName(String)200%40%337711
reset()190%40%338811
getCvTerm(int, GmodDAO, boolean)190%40%335511
initMDC(DatabaseDocument)170%n/a118811
getSimilarityMatches(List)170%20%224411
append(String)160%n/a111111
getChadoSequence(Feature, ByteBuffer)150%n/a115511
showCvTermLookUp()150%n/a117711
DatabaseDocument(DatabaseDocument, String, String, boolean, InputStreamProgressListener)140%n/a114411
getCvTermsByCvName(String)140%20%224411
createDatabaseDocument()130%n/a111111
getCvtermName(int, GmodDAO, boolean)130%20%223311
getChadoSequence(GmodDAO, ByteBuffer)120%n/a113311
loadCvTerms()120%n/a114411
getUserName()120%n/a113311
isCvThreadAlive()110%40%335511
getFeatureByUniquename(String)80%n/a112211
getOrganismByCommonName(String)70%n/a112211
getClustersByFeatureIds(List)70%n/a112211
getParentFeaturesByChildFeatureIds(List)70%n/a112211
getFeatureDbXRefsByFeatureId(List)70%n/a112211
getFeaturesByListOfIds(List)70%n/a112211
getFeaturePropByFeatureIds(List)70%n/a112211
getFeatureLocsByListOfIds(List)70%n/a112211
ping()0%n/a112211
getResidueFeatures(Integer)0%n/a111111
setReadChildren(boolean)0%n/a112211
setName(String)0%n/a112211
setRange(Range)0%n/a112211
setLazyFeatureLoad(boolean)0%n/a112211
getSrcFeatureId()0%n/a111111
getPfield()0%n/a111111
isSingleSchema()0%n/a111111
getIdFeatureStore()0%n/a111111
isLazyFeatureLoad()0%n/a111111
setTYPES(String[][][])0%n/a112211
readable()0%n/a111111
writable()0%n/a111111
getParent()0%n/a111111
getTYPES()0%n/a111111
static {...}102100%n/a0101001