Test case 1
1: String string0 = "repeat_unit";
2: CvTerm cvTerm0 = DatabaseDocument.getCvTermByCvTermName("repeat_unit");
3: String string1 = null;
4: int int0 = (-222);
5: StringContent stringContent0 = new StringContent(int0);
6: PlainDocument plainDocument0 = new PlainDocument(stringContent0);
7: String string2 = "the base position (";
8: JPasswordField jPasswordField0 = new JPasswordField(plainDocument0, string2, int0);
9: DefaultTreeCellRenderer defaultTreeCellRenderer0 = new DefaultTreeCellRenderer();
10: defaultTreeCellRenderer0.getVerticalTextPosition();
11: Color color0 = defaultTreeCellRenderer0.getBorderSelectionColor();
12: jPasswordField0.setForeground(color0);
13: jPasswordField0.setToolTipText(string2);
14: plainDocument0.readLock();
15: DatabaseDocument databaseDocument0 = new DatabaseDocument(string1, jPasswordField0);
16: String string3 = "G:#rXJd";
17: databaseDocument0.getGffDocuments(string3, string0, string2);
18: String string4 = "";
19: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
20: Cv cv0 = new Cv();
21: String string5 = "htsjdk.variant.variantcontext.Genotype";
22: JPasswordField jPasswordField1 = new JPasswordField(string5, int0);
23: KeyStroke keyStroke0 = KeyStroke.getKeyStroke(int0, int0);
24: jPasswordField1.getConditionForKeyStroke(keyStroke0);
25: HierarchyListener hierarchyListener0 = mock(HierarchyListener.class, new ViolatedAssumptionAnswer());
26: HierarchyListener hierarchyListener1 = AWTEventMulticaster.add(hierarchyListener0, hierarchyListener0);
27: HierarchyListener hierarchyListener2 = AWTEventMulticaster.remove(hierarchyListener1, hierarchyListener1);
28: jPasswordField1.removeHierarchyListener(hierarchyListener2);
29: JTextComponent.AccessibleJTextComponent jTextComponent_AccessibleJTextComponent0 = jPasswordField1.new AccessibleJTextComponent();
30: jTextComponent_AccessibleJTextComponent0.getAccessibleIcon();
31: plainDocument0.removeDocumentListener(jTextComponent_AccessibleJTextComponent0);
32: List<Object> list0 = iBatisDAO0.getAllTermsInCvWithCount(cv0);
33: databaseDocument0.getFeatureLocsByListOfIds(list0);
34: DatabaseDocument.getCvtermID(string4);
35: databaseDocument0.insertCvTerm(cvTerm0);
36: databaseDocument0.insertCvTerm(cvTerm0);
37: String string6 = "9 C`1=1OI-rL";
38: String string7 = "";
39: databaseDocument0.getGffDocuments(string2, string6, string7);
40: databaseDocument0.getIdFeatureStore();
41: databaseDocument0.getCdsFeatureLocsByTranscriptName(string2);
42: databaseDocument0.readable();
Test case 2
1: List<String> list0 = DatabaseDocument.getCvControledCurationNames();
2: String string0 = "Y1IEQFu:KvprQqYy";
3: int int0 = 1197;
4: GapContent gapContent0 = new GapContent(int0);
5: StyleContext styleContext0 = null;
6: DefaultStyledDocument defaultStyledDocument0 = new DefaultStyledDocument(gapContent0, styleContext0);
7: int int1 = 4481;
8: JPasswordField jPasswordField0 = new JPasswordField(defaultStyledDocument0, string0, int1);
9: boolean boolean0 = true;
10: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
11: DatabaseDocument databaseDocument0 = new DatabaseDocument(string0, jPasswordField0, string0, string0, boolean0, inputStreamProgressListener0);
12: databaseDocument0.getParentFeaturesByChildFeatureIds(list0);
13: int int2 = 2;
14: int int3 = 1058;
15: TextField textField0 = new TextField(databaseDocument0.TRANSCRIPT, int3);
16: Timestamp timestamp0 = new Timestamp(int2);
17: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
18: EmblStreamFeature emblStreamFeature1 = new EmblStreamFeature(emblStreamFeature0);
19: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(emblStreamFeature1);
20: String string1 = "[,X,,r5`g";
21: ChadoTransaction chadoTransaction0 = new ChadoTransaction(int2, textField0, timestamp0, gFFStreamFeature0, string1, databaseDocument0.CONTROLLED_CURATION_TAG_CVNAME);
22: DatabaseDocument.getUpdateResiduesColumnTransactions(chadoTransaction0);
Test case 3
1: JPasswordField jPasswordField0 = new JPasswordField();
2: String string0 = null;
3: boolean boolean0 = false;
4: DatabaseDocument databaseDocument0 = new DatabaseDocument("", jPasswordField0, (String) null, (String) null, false, (InputStreamProgressListener) null);
5: String string1 = "";
6: DatabaseDocument.CONTROLLED_CURATION_TAG_CVNAME = databaseDocument0.PRODUCTS_TAG_CVNAME;
7: JdbcDAO jdbcDAO0 = new JdbcDAO(string1, jPasswordField0);
8: DatabaseDocument.CHADO_INFER_CDS = boolean0;
9: List<Object> list0 = jdbcDAO0.getSchema();
10: List<Object> list1 = databaseDocument0.getFeaturePropByFeatureIds(list0);
11: jdbcDAO0.delete(string1);
12: jdbcDAO0.getResidueType(string0);
13: databaseDocument0.getFeaturePropByFeatureIds(list1);
14: databaseDocument0.getFeaturePropByFeatureIds(list1);
15: String string2 = "F4gyt,4SWEfF";
16: databaseDocument0.getPartOfFeatures(string2);
17: String string3 = "";
18: Vector<Feature> vector0 = databaseDocument0.getPolypeptideFeatures(string3);
19: databaseDocument0.ping();
20: DatabaseDocument.getCvControledCurationNames();
21: databaseDocument0.getClustersByFeatureIds(vector0);
22: boolean boolean1 = false;
23: databaseDocument0.setReadChildren(boolean1);
24: databaseDocument0.isLazyFeatureLoad();
25: int int0 = 0;
26: JViewport jViewport0 = new JViewport();
27: long long0 = (-776L);
28: Timestamp timestamp0 = new Timestamp(long0);
29: String string4 = "";
30: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(string4);
31: String string5 = "VU5|_]X";
32: ChadoTransaction chadoTransaction0 = new ChadoTransaction(int0, jViewport0, timestamp0, gFFStreamFeature0, string5, string1);
33: ChadoTransaction chadoTransaction1 = chadoTransaction0.copy();
34: DatabaseDocument.getUpdateResiduesColumnTransactions(chadoTransaction1);
Test case 4
1: SshLogin sshLogin0 = new SshLogin();
2: JPasswordField jPasswordField0 = sshLogin0.getJPasswordField();
3: ByteBuffer byteBuffer0 = new ByteBuffer();
4: DatabaseDocument databaseDocument0 = new DatabaseDocument("u", jPasswordField0, "3]", "3]", byteBuffer0, "u");
5: databaseDocument0.readable();
Test case 5
1: String string0 = "ungapped id";
2: JPasswordField jPasswordField0 = new JPasswordField(0);
3: DatabaseDocument databaseDocument0 = new DatabaseDocument("ungapped id", jPasswordField0);
4: Organism organism0 = new Organism();
5: CvTerm cvTerm0 = DatabaseDocument.getCvTermByCvPartAndCvTerm("RILEY", "CC_");
6: boolean boolean0 = true;
7: boolean boolean1 = false;
8: Timestamp timestamp0 = null;
9: Feature feature0 = new Feature(organism0, cvTerm0, string0, boolean0, boolean1, timestamp0, timestamp0);
10: int int0 = 0;
11: Range range0 = new Range(int0);
12: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
13: DatabaseDocument databaseDocument1 = new DatabaseDocument(databaseDocument0, databaseDocument0.EXONMODEL, feature0, range0, inputStreamProgressListener0);
14: DatabaseDocument.initMDC(databaseDocument1);
Test case 6
1: DatabaseDocument.getTYPES();
2: JPasswordField jPasswordField0 = new JPasswordField();
3: jPasswordField0.setAutoscrolls(false);
4: ByteBuffer byteBuffer0 = new ByteBuffer();
5: DatabaseDocument databaseDocument0 = new DatabaseDocument("GQ", jPasswordField0, "/H`Z%:6L%UU", "/H`Z%:6L%UU", byteBuffer0, "F0wmBupZKHB");
Test case 7
1: JPasswordField jPasswordField0 = new JPasswordField(1462);
2: DatabaseDocument databaseDocument0 = new DatabaseDocument("ID=", jPasswordField0, "ID=", "ID=");
Test case 8
1: JPasswordField jPasswordField0 = new JPasswordField();
2: DatabaseDocument databaseDocument0 = new DatabaseDocument("Mm^&'mi", jPasswordField0, ";current=false", "Mm^&'mi");
3: DatabaseDocument.getCvTermByCvTermName("mRNA");
Test case 9
1: JPasswordField jPasswordField0 = new JPasswordField();
2: DatabaseDocument databaseDocument0 = new DatabaseDocument("SELECT dbxref_id FROM dbxref WHERE accession='", jPasswordField0, "SELECT dbxref_id FROM dbxref WHERE accession='", "SELECT dbxref_id FROM dbxref WHERE accession='");
3: String string0 = "";
4: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
5: int int0 = 0;
6: Feature feature0 = iBatisDAO0.getFeatureById(int0);
7: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence(databaseDocument0.PRODUCTS_TAG_CVNAME);
8: Bases bases0 = new Bases(fastaStreamSequence0);
9: Strand strand0 = bases0.getReverseStrand();
10: int int1 = 120;
11: int int2 = 1642;
12: MarkerRange markerRange0 = strand0.makeMarkerRangeFromRawPositions(int1, int2);
13: Range range0 = markerRange0.getRange();
14: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
15: DatabaseDocument databaseDocument1 = new DatabaseDocument(databaseDocument0, string0, feature0, range0, inputStreamProgressListener0);
16: databaseDocument1.getOutputStream();
Test case 10
1: JPasswordField jPasswordField0 = new JPasswordField("Gap");
2: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
3: DatabaseDocument databaseDocument0 = new DatabaseDocument("public", jPasswordField0, "", "", true, inputStreamProgressListener0);
4: String string0 = databaseDocument0.getSrcFeatureId();
5: assertTrue(databaseDocument0.isLazyFeatureLoad());
6: assertTrue(databaseDocument0.isSingleSchema());
7: assertEquals("", string0);
Test case 11
1: DatabaseDocument databaseDocument0 = new DatabaseDocument(";", (JPasswordField) null);
Test case 12
1: DatabaseDocument.isCvThreadAlive();
2: DatabaseDocument databaseDocument0 = new DatabaseDocument("`E'&[", (JPasswordField) null);
3: JdbcDAO jdbcDAO0 = new JdbcDAO("]?", (JPasswordField) null);
Test case 13
1: JPasswordField jPasswordField0 = new JPasswordField();
2: DatabaseDocument databaseDocument0 = new DatabaseDocument("a", jPasswordField0, "@@e6}p)1dlsq", "@@e6}p)1dlsq", true);
Test case 14
1: JPasswordField jPasswordField0 = new JPasswordField("\"ht%Z4Gs9W28\"7", 0);
2: ByteBuffer byteBuffer0 = new ByteBuffer();
3: DatabaseDocument databaseDocument0 = new DatabaseDocument(")?}FI", jPasswordField0, "db_xref=", ")?}FI", byteBuffer0, "\"ht%Z4Gs9W28\"7");
4: databaseDocument0.setLazyFeatureLoad(false);
5: databaseDocument0.getIdFeatureStore();
6: JdbcDAO jdbcDAO0 = new JdbcDAO("mRNA", jPasswordField0);
Test case 15
1: DatabaseDocument.isCvThreadAlive();
2: GapContent gapContent0 = new GapContent();
3: StyleContext styleContext0 = new StyleContext();
4: DefaultStyledDocument defaultStyledDocument0 = new DefaultStyledDocument(gapContent0, styleContext0);
5: JPasswordField jPasswordField0 = new JPasswordField(defaultStyledDocument0, "|9:2[V84{<9P;*RZwBz", 0);
6: ByteBuffer byteBuffer0 = new ByteBuffer();
7: DatabaseDocument databaseDocument0 = new DatabaseDocument("|9:2[V84{<9P;*RZwBz", jPasswordField0, "~=j4*#x!", "yyyy/MM/dd HH:mm:ss", byteBuffer0, "");
8: databaseDocument0.getGffDocuments("p66q~0ybtb;&i[OXw", "@qM2*C)RBsT9=2 )^;", "|9:2[V84{<9P;*RZwBz");
Test case 16
1: DatabaseDocument.getCvTermByCvAndCvTerm("2$}m!}D?(#XZwX?JW", "2$}m!}D?(#XZwX?JW");
Test case 17
1: SshLogin sshLogin0 = new SshLogin();
2: JPasswordField jPasswordField0 = sshLogin0.getJPasswordField();
3: DatabaseDocument databaseDocument0 = new DatabaseDocument("hA,8B`{:{YwZPwp`G", jPasswordField0);
4: databaseDocument0.getChadoSequence("com.sshtools.j2ssh.authentication.PasswordAuthenticationClient");
Test case 18
1: String string0 = "";
2: JPasswordField jPasswordField0 = new JPasswordField("4Wf3sL;E}\\%(G");
3: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
4: DatabaseDocument databaseDocument0 = new DatabaseDocument("", jPasswordField0, "", "4Wf3sL;E}\\%(G", true, inputStreamProgressListener0);
5: databaseDocument0.readable();
6: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
7: CvTerm cvTerm0 = iBatisDAO0.getGoCvTermByAccViaDb(string0);
8: databaseDocument0.insertCvTerm(cvTerm0);
Test case 19
1: DatabaseDocument.getCvterms("", "", false);
Test case 20
1: DatabaseDocument.getSynonymTypeNames("pA@r:;da[K![e", (GFFStreamFeature) null);
Test case 21
1: JPasswordField jPasswordField0 = new JPasswordField("K+1Ia");
2: DatabaseDocument databaseDocument0 = new DatabaseDocument("`0XG'iDKb", jPasswordField0, "polygon", "polygon", true);
3: databaseDocument0.isLazyFeatureLoad();
Test case 22
1: JPasswordField jPasswordField0 = new JPasswordField();
2: jPasswordField0.echoCharIsSet();
3: DatabaseDocument databaseDocument0 = new DatabaseDocument("#created ", jPasswordField0);
4: databaseDocument0.isLazyFeatureLoad();
5: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
6: String string0 = "VERSION ";
7: List<Object> list0 = iBatisDAO0.getResiduesByUniqueName(string0);
8: databaseDocument0.getSimilarityMatches(list0);
9: int int0 = 11;
10: Key key0 = Key.CDS;
11: String string1 = "Efu";
12: Location location0 = new Location(string1);
13: QualifierVector qualifierVector0 = new QualifierVector();
14: QualifierVector qualifierVector1 = qualifierVector0.copy();
15: QualifierVector qualifierVector2 = qualifierVector1.copy();
16: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(key0, location0, qualifierVector2);
17: Timestamp timestamp0 = gFFStreamFeature0.getLastModified();
18: String string2 = "GFF:\n";
19: ChadoTransaction chadoTransaction0 = new ChadoTransaction(int0, iBatisDAO0, timestamp0, gFFStreamFeature0, string1, string2);
20: DatabaseDocument.getUpdateResiduesColumnTransactions(chadoTransaction0);
21: databaseDocument0.getGraphs();
22: int int1 = 1940;
23: String string3 = "dqcvT M7s4jHX'I7";
24: databaseDocument0.getGraphData(int1, string3);
Test case 23
1: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
2: DatabaseDocument databaseDocument0 = new DatabaseDocument((DatabaseDocument) null, "kFOV=*0d", "kFOV=*0d", true, inputStreamProgressListener0);
Test case 24
1: JPasswordField jPasswordField0 = new JPasswordField(45);
2: DatabaseDocument databaseDocument0 = new DatabaseDocument("(85.aaj<G`7R~_", jPasswordField0);
3: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
4: DatabaseDocument databaseDocument1 = new DatabaseDocument(databaseDocument0, "", "", false, inputStreamProgressListener0);
5: databaseDocument1.addInputStreamProgressListener((InputStreamProgressListener) null);
6: databaseDocument1.getInputStream();
Test case 25
1: DatabaseDocument.getCvtermFromGoId("_-/2UZ^`cSGwe");
Test case 26
1: DatabaseDocument.getCvtermID((String) null);
Test case 27
1: StringContent stringContent0 = new StringContent(656);
2: StyleContext styleContext0 = new StyleContext();
3: DefaultStyledDocument defaultStyledDocument0 = new DefaultStyledDocument(stringContent0, styleContext0);
4: JPasswordField jPasswordField0 = new JPasswordField(defaultStyledDocument0, (String) null, 0);
5: ByteBuffer byteBuffer0 = new ByteBuffer();
6: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0, "_<nFvPs", (String) null, byteBuffer0, (String) null);
Test case 28
1: JPasswordField jPasswordField0 = null;
2: String string0 = "";
3: String string1 = "aW3(Lm-PYK*%d^#P";
4: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
5: DatabaseDocument databaseDocument0 = new DatabaseDocument("", (JPasswordField) null, "", "aW3(Lm-PYK*%d^#P", true, inputStreamProgressListener0);
6: databaseDocument0.writable();
7: databaseDocument0.showCvTermLookUp();
8: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
9: String string2 = "5xN\\m{x\\i";
10: Feature feature0 = iBatisDAO0.getFeatureByUniqueName(databaseDocument0.EXONMODEL, string2);
11: String string3 = "";
12: databaseDocument0.getOrganismByCommonName(string3);
13: String string4 = null;
14: feature0.getFeatureProps();
15: iBatisDAO0.getFeaturesByUniqueName(string4);
16: List<Object> list0 = iBatisDAO0.getFeaturePubsBySrcFeature(feature0);
17: databaseDocument0.getSimilarityMatches(list0);
18: String string5 = null;
19: String string6 = "";
20: String string7 = "";
21: DatabaseDocument databaseDocument1 = new DatabaseDocument(string5, jPasswordField0, string6, string7);
22: DatabaseDocument.initMDC(databaseDocument1);
23: databaseDocument0.reset();
24: String[][][] stringArray0 = new String[1][7][0];
25: String[][] stringArray1 = new String[4][0];
26: String[] stringArray2 = new String[8];
27: stringArray2[0] = string6;
28: stringArray2[1] = databaseDocument1.CONTROLLED_CURATION_TAG_CVNAME;
29: stringArray2[2] = string1;
30: stringArray2[3] = databaseDocument1.CONTROLLED_CURATION_TAG_CVNAME;
31: stringArray2[4] = string0;
32: stringArray2[5] = databaseDocument0.CONTROLLED_CURATION_TAG_CVNAME;
33: stringArray2[6] = string3;
34: stringArray2[7] = databaseDocument0.EXONMODEL;
35: stringArray1[0] = stringArray2;
36: String[] stringArray3 = new String[5];
37: stringArray3[0] = databaseDocument1.RILEY_TAG_CVNAME;
38: stringArray3[1] = string1;
39: stringArray3[2] = databaseDocument0.EXONMODEL;
40: stringArray3[3] = databaseDocument1.RILEY_TAG_CVNAME;
41: stringArray3[4] = databaseDocument1.RILEY_TAG_CVNAME;
42: stringArray1[1] = stringArray3;
43: String[] stringArray4 = new String[8];
44: stringArray4[0] = databaseDocument0.PRODUCTS_TAG_CVNAME;
45: stringArray4[1] = string0;
46: stringArray4[2] = databaseDocument1.EXONMODEL;
47: stringArray4[3] = string4;
48: stringArray4[4] = string2;
49: stringArray4[5] = databaseDocument0.PRODUCTS_TAG_CVNAME;
50: stringArray4[6] = string1;
51: stringArray4[7] = databaseDocument1.TRANSCRIPT;
52: stringArray1[2] = stringArray4;
53: String[] stringArray5 = new String[3];
54: stringArray5[0] = string5;
55: stringArray5[1] = string1;
56: stringArray5[2] = databaseDocument1.RILEY_TAG_CVNAME;
57: stringArray1[3] = stringArray5;
58: stringArray0[0] = stringArray1;
59: DatabaseDocument.setTYPES(stringArray0);
Test case 29
1: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
2: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(emblStreamFeature0);
3: GenbankStreamFeature genbankStreamFeature0 = new GenbankStreamFeature(gFFStreamFeature0);
4: DatabaseDocument.getCvTermByCvTermId(0, genbankStreamFeature0);
Test case 30
1: StringContent stringContent0 = new StringContent(1142);
2: StyleContext styleContext0 = StyleContext.getDefaultStyleContext();
3: DefaultStyledDocument defaultStyledDocument0 = new DefaultStyledDocument(stringContent0, styleContext0);
4: JPasswordField jPasswordField0 = new JPasswordField(defaultStyledDocument0, "Runtime Problems...\n", 1142);
5: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
6: DatabaseDocument databaseDocument0 = new DatabaseDocument("Runtime Problems...\n", jPasswordField0, "g*", "Runtime Problems...\n", false, inputStreamProgressListener0);
7: DatabaseDocument.LocationComarator databaseDocument_LocationComarator0 = databaseDocument0.new LocationComarator();
8: JdbcDAO jdbcDAO0 = new JdbcDAO("", jPasswordField0);
Test case 31
1: SshLogin sshLogin0 = new SshLogin();
2: JPasswordField jPasswordField0 = sshLogin0.getJPasswordField();
3: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0, (String) null, (String) null, true);
Test case 32
1: JPasswordField jPasswordField0 = new JPasswordField();
2: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0);
Test case 33
1: JPasswordField jPasswordField0 = new JPasswordField(71);
2: DatabaseDocument databaseDocument0 = new DatabaseDocument("+Rf9$ZU5ghkDPZs)?", jPasswordField0, "+Rf9$ZU5ghkDPZs)?", "+Rf9$ZU5ghkDPZs)?");
3: databaseDocument0.reset();
4: Timestamp.valueOf((String) null);
Test case 34
1: JPasswordField jPasswordField0 = new JPasswordField();
2: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0, (String) null, "?Rj3d!%.{BusxC5");
Test case 35
1: DatabaseDocument.isCvThreadAlive();
2: DatabaseDocument.isCvThreadAlive();
3: JPasswordField jPasswordField0 = new JPasswordField();
4: String string0 = "oiy";
5: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
6: DatabaseDocument databaseDocument0 = new DatabaseDocument(",kPCOAgKXP#;{", jPasswordField0, "oiy", "", false, inputStreamProgressListener0);
7: String string1 = "sR bw7vQ,TMLX&>O";
8: databaseDocument0.setName(",kPCOAgKXP#;{");
9: boolean boolean0 = false;
10: InputStreamProgressListener inputStreamProgressListener1 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
11: databaseDocument0.getOrganismsContainingSrcFeatures();
12: DatabaseDocument databaseDocument1 = new DatabaseDocument(databaseDocument0, string1, string0, boolean0, inputStreamProgressListener1);
13: databaseDocument1.readable();
14: String string2 = "aspect=C%3B";
15: DatabaseDocument.getCvTermByCvTermName(string2);
16: databaseDocument0.getPartOfFeatures(string2);
Test case 36
1: JPasswordField jPasswordField0 = new JPasswordField(0);
2: jPasswordField0.isFocusable();
3: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
4: jPasswordField0.getX();
5: HierarchyBoundsListener hierarchyBoundsListener0 = mock(HierarchyBoundsListener.class, new ViolatedAssumptionAnswer());
6: AWTEventMulticaster.remove(hierarchyBoundsListener0, hierarchyBoundsListener0);
7: AWTEventMulticaster.add((HierarchyBoundsListener) null, (HierarchyBoundsListener) null);
8: jPasswordField0.addHierarchyBoundsListener((HierarchyBoundsListener) null);
9: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0, (String) null, (String) null, true, inputStreamProgressListener0);
Test case 37
1: boolean boolean0 = true;
2: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
3: DatabaseDocument databaseDocument0 = new DatabaseDocument("-b5z<1", (JPasswordField) null, "-b5z<1", "-b5z<1", true, inputStreamProgressListener0);
4: String string0 = "feature_relationship_rank=";
5: DatabaseDocument.isCvThreadAlive();
6: databaseDocument0.getFeatureLocsByListOfIds((List) null);
7: databaseDocument0.getChadoSequence(string0);
8: DatabaseDocument.CHADO_INFER_CDS = boolean0;
9: DatabaseDocument.initMDC(databaseDocument0);
10: databaseDocument0.readable();
11: String string1 = "(!L2_;_r<6C1P'2j%5";
12: databaseDocument0.getPartOfFeatures(string1);
13: databaseDocument0.getCdsFeatureLocsByTranscriptName(string0);
14: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
15: Feature feature0 = new Feature(emblStreamFeature0);
16: Strand strand0 = feature0.getStrand();
17: Range range0 = feature0.getMaxRawRange();
18: strand0.getSpacedTranslation(range0, databaseDocument0.CHADO_INFER_CDS);
19: strand0.getTCount();
20: EntropyAlgorithm entropyAlgorithm0 = new EntropyAlgorithm(strand0);
21: Feature feature1 = null;
22: boolean boolean1 = feature0.rawGreaterThan(feature1);
23: boolean boolean2 = false;
24: entropyAlgorithm0.setUserMaxMin(boolean2);
25: Integer integer0 = entropyAlgorithm0.getDefaultMinWindowSize();
26: databaseDocument0.getResidueFeatures(integer0);
27: String string2 = "";
28: DatabaseDocument.getCvTermByCvPartAndCvTerm(databaseDocument0.RILEY_TAG_CVNAME, string2);
29: String[][][] stringArray0 = new String[0][5][7];
30: DatabaseDocument.setTYPES(stringArray0);
31: String string3 = "org.gmod.schema.general.DbXRef";
32: DatabaseDocument.getCvterms(string3, databaseDocument0.RILEY_TAG_CVNAME, boolean1);
Test case 38
1: JPasswordField jPasswordField0 = new JPasswordField();
2: DatabaseDocument databaseDocument0 = new DatabaseDocument("", jPasswordField0, "", ">9+'u.:15GsD", false);
3: databaseDocument0.getCvTermsByCvName("");