BamUtils

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total505 of 1,32161%98 of 16841%65102101276418
countOverRange(BamView, String, int, int, int, int[][])1240%220%1212292911
calc(BamView, String, int, boolean, JProgressBar)986539%24620%1316183001
getCount(BamView, int, int, String, boolean, boolean)855137%2314%1213172901
getIndexFile(String)6418374%81666%81364501
validateSAMFile(SamReader, CRAMReferenceSequenceFile, boolean)390%20%22101011
createIndexFileFromScratch(String, File)2510981%4660%4642501
getFtpBufferSize()230%20%225511
calculateMappedReads(BamView, FeatureVector, boolean, boolean, boolean, int[], JProgressBar)1518092%31381%3933201
getFtpSocketTimeout()15834%1150%122501
count(BamView, String, int, int, boolean, boolean, boolean)47895%5964%4812101
samRecordEqualityCheck(SAMRecord, SAMRecord)43188%4866%371901
isCramFile(String)3975%n/a012601
isBamFile(String)3975%n/a012601
BamUtils()30%n/a111111
getFeatureLength(Feature)31100%2100%020601
constructIndexFilename(String)29100%4100%030601
createTempIndexFile(URL)29100%4100%030901
static {...}4100%n/a010201