Test case 1
1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("");
2: Bases bases0 = new Bases(rawStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: GCWindowAlgorithm gCWindowAlgorithm0 = new GCWindowAlgorithm(strand0);
5: gCWindowAlgorithm0.getMaximumInternal();
6: gCWindowAlgorithm0.getAverage();
7: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
8: bases0.getGCount();
9: GCFrameAlgorithm gCFrameAlgorithm0 = new GCFrameAlgorithm(strand0);
10: gCFrameAlgorithm0.getDefaultStepSize(1);
11: Frame frame0 = new Frame("");
Test case 2
1: String string0 = SVGConstants.SVG_STEMH_ATTRIBUTE;
2: assertEquals("stemh", string0);
Test case 3
1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("6");
2: rawStreamSequence0.getCharSubSequence(5, 5);
3: Bases bases0 = new Bases(rawStreamSequence0);
4: Strand strand0 = bases0.getReverseStrand();
5: GCWindowAlgorithm gCWindowAlgorithm0 = new GCWindowAlgorithm(strand0);
6: Bases.reverseComplement("6");
7: gCWindowAlgorithm0.getAverage();
8: assertFalse(gCWindowAlgorithm0.isRevCompDisplay());
9:
10: gCWindowAlgorithm0.setRevCompDisplay(true);
11: assertTrue(gCWindowAlgorithm0.isRevCompDisplay());
Test case 4
1: DefaultEditorKit.CopyAction defaultEditorKit_CopyAction0 = new DefaultEditorKit.CopyAction();
2: Key key0 = Key.CDS;
3: assertEquals(3, key0.length());
Test case 5
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("/^~4H8F");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: fastaStreamSequence0.forceReset();
4: FileSystemHandling.shouldAllThrowIOExceptions();
5: bases0.getLength();
6: Bases.reverseComplement("/^~4H8F");
7: Strand strand0 = bases0.getForwardStrand();
8: bases0.reverseComplement();
9: fastaStreamSequence0.getSubSequence(1, 1);
10: EntropyAlgorithm entropyAlgorithm0 = new EntropyAlgorithm(strand0);
11: entropyAlgorithm0.getDefaultStepSize(0);
12: entropyAlgorithm0.getDefaultMinWindowSize();
13: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
14: fastaStreamSequence0.charAt(1);
15: float[] floatArray0 = new float[6];
16: GenericDocumentType genericDocumentType0 = new GenericDocumentType("VEU/^r9", "@@d@@@@", "y}:e");
17: GenericDOMImplementation genericDOMImplementation0 = new GenericDOMImplementation();
18: GenericDocument genericDocument0 = new GenericDocument(genericDocumentType0, genericDOMImplementation0);
19: SVGGraphics2D sVGGraphics2D0 = new SVGGraphics2D(genericDocument0);
20: SVGGraphics2D sVGGraphics2D1 = (SVGGraphics2D)sVGGraphics2D0.create(1, 1, 7, (-1017));
21: LineAttributes[] lineAttributesArray0 = new LineAttributes[4];
22: DefaultTreeCellRenderer defaultTreeCellRenderer0 = new DefaultTreeCellRenderer();
23: ColorUIResource colorUIResource0 = (ColorUIResource)defaultTreeCellRenderer0.getBackgroundNonSelectionColor();
24: LineAttributes lineAttributes0 = new LineAttributes(colorUIResource0);
25: lineAttributesArray0[0] = lineAttributes0;
26: LineAttributes lineAttributes1 = new LineAttributes(colorUIResource0);
27: lineAttributesArray0[1] = lineAttributes1;
28: LineAttributes lineAttributes2 = new LineAttributes(colorUIResource0);
29: LineAttributes lineAttributes3 = new LineAttributes(colorUIResource0);
30: lineAttributesArray0[3] = lineAttributes3;
31: iCDIAlgorithm0.drawLegend(sVGGraphics2D1, 1195, 731, lineAttributesArray0, 0);
Test case 6
1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("");
2: Bases bases0 = new Bases(rawStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: GCWindowAlgorithm gCWindowAlgorithm0 = new GCWindowAlgorithm(strand0);
5: gCWindowAlgorithm0.getMaximumInternal();
6: gCWindowAlgorithm0.getAverage();
7: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
8: bases0.getGCount();
9: GCFrameAlgorithm gCFrameAlgorithm0 = new GCFrameAlgorithm(strand0);
10: gCFrameAlgorithm0.setRevCompDisplay(false);
11: gCFrameAlgorithm0.getDefaultStepSize(1);
12: Frame frame0 = new Frame("");
Test case 7
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("/^~4H8F");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: fastaStreamSequence0.forceReset();
4: FileSystemHandling.shouldAllThrowIOExceptions();
5: bases0.getLength();
6: Bases.reverseComplement("/^~4H8F");
7: Strand strand0 = bases0.getForwardStrand();
8: bases0.reverseComplement();
9: fastaStreamSequence0.getSubSequence(1, 1);
10: EntropyAlgorithm entropyAlgorithm0 = new EntropyAlgorithm(strand0);
11: entropyAlgorithm0.getDefaultStepSize(0);
12: entropyAlgorithm0.getDefaultMinWindowSize();
13: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
14: fastaStreamSequence0.charAt(1);
15: float[] floatArray0 = new float[6];
16: GenericDocumentType genericDocumentType0 = new GenericDocumentType("VEU/^r9", "@@d@@@@", "y}:e");
17: GenericDOMImplementation genericDOMImplementation0 = new GenericDOMImplementation();
18: GenericDocument genericDocument0 = new GenericDocument(genericDocumentType0, genericDOMImplementation0);
19: SVGGraphics2D sVGGraphics2D0 = new SVGGraphics2D(genericDocument0);
20: SVGGraphics2D sVGGraphics2D1 = (SVGGraphics2D)sVGGraphics2D0.create(1, 1, 7, (-1017));
21: LineAttributes[] lineAttributesArray0 = new LineAttributes[4];
22: DefaultTreeCellRenderer defaultTreeCellRenderer0 = new DefaultTreeCellRenderer();
23: ColorUIResource colorUIResource0 = (ColorUIResource)defaultTreeCellRenderer0.getBackgroundNonSelectionColor();
24: LineAttributes lineAttributes0 = new LineAttributes(colorUIResource0);
25: lineAttributesArray0[0] = lineAttributes0;
26: LineAttributes lineAttributes1 = new LineAttributes(colorUIResource0);
27: lineAttributesArray0[1] = lineAttributes1;
28: LineAttributes lineAttributes2 = new LineAttributes(colorUIResource0);
29: lineAttributesArray0[2] = lineAttributes2;
30: LineAttributes lineAttributes3 = new LineAttributes(colorUIResource0);
31: lineAttributesArray0[3] = lineAttributes3;
32: iCDIAlgorithm0.drawLegend(sVGGraphics2D1, 1195, 731, lineAttributesArray0, 0);
33: floatArray0[0] = (float) 1;
34: floatArray0[1] = 0.395F;
35: floatArray0[2] = (float) 0;
36: floatArray0[3] = (float) 1;
37: FileSystemHandling.setPermissions((EvoSuiteFile) null, true, true, true);
38: floatArray0[4] = (float) 2;
39: floatArray0[5] = (float) 0;
Test case 8
1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence("");
2: RawStreamSequence rawStreamSequence0 = new RawStreamSequence(emblStreamSequence0);
3: EmblStreamSequence emblStreamSequence1 = new EmblStreamSequence(rawStreamSequence0);
4: Bases bases0 = new Bases(emblStreamSequence1);
5: Strand strand0 = bases0.getForwardStrand();
6: EntropyAlgorithm entropyAlgorithm0 = new EntropyAlgorithm(strand0);
7: emblStreamSequence1.forceReset();
8: entropyAlgorithm0.getDefaultMinWindowSize();
9: entropyAlgorithm0.getBases();
10: assertFalse(entropyAlgorithm0.isRevCompDisplay());
Test case 9
1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("");
2: StringWriter stringWriter0 = new StringWriter();
3: rawStreamSequence0.writeToStream(stringWriter0);
4: Bases bases0 = new Bases(rawStreamSequence0);
5: Strand strand0 = bases0.getForwardStrand();
6: GCWindowAlgorithm gCWindowAlgorithm0 = new GCWindowAlgorithm(strand0);
7: gCWindowAlgorithm0.getMaximumInternal();
8: strand0.getTCount();
9: gCWindowAlgorithm0.getAverage();
10: ICDIAlgorithm iCDIAlgorithm0 = new ICDIAlgorithm(strand0);
11: bases0.getGCount();
12: iCDIAlgorithm0.isRevCompDisplay();
13: GCFrameAlgorithm gCFrameAlgorithm0 = new GCFrameAlgorithm(strand0);
14: gCFrameAlgorithm0.getDefaultStepSize(1);
15: KarlinSigAlgorithm karlinSigAlgorithm0 = new KarlinSigAlgorithm(strand0);
16: karlinSigAlgorithm0.getDefaultMaxWindowSize();
17: Frame frame0 = new Frame("");
Source Code
1: No source found for uk.ac.sanger.artemis.plot.BaseAlgorithm
EvoSuite Parameters
- TARGET_CLASS: uk.ac.sanger.artemis.plot.BaseAlgorithm
- Size: 9
- Length: 130
- criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
- Coverage: 0.4737037493562458
- BranchCoverage: 0.5185185185185185
- MethodCoverage: 0.5714285714285714
- OutputCoverage: 0.15384615384615385
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