Summary

Test suite

Test case 1

  1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
  2: Bases bases0 = new Bases(fastaStreamSequence0);
  3: Strand strand0 = bases0.getReverseStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: codon12CorrelationAlgorithm0.getAverage();

Test case 2

  1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
  2: Bases bases0 = new Bases(fastaStreamSequence0);
  3: Strand strand0 = bases0.getReverseStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: Float float0 = codon12CorrelationAlgorithm0.getMinimumInternal();
  6: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  7: assertEquals(0.0F, (float)float0, 0.01F);
  8: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());

Test case 3

  1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
  2: Bases bases0 = new Bases(genbankStreamSequence0);
  3: Strand strand0 = bases0.getForwardStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: int int0 = codon12CorrelationAlgorithm0.getValueCount();
  6: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  7: assertEquals(3, int0);
  8: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());

Test case 4

  1: Bases bases0 = new Bases((Sequence) null);
  2: Strand strand0 = bases0.getReverseStrand();
  3: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  4: Float float0 = codon12CorrelationAlgorithm0.getMaximumInternal();
  5: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  6: assertEquals(100.0F, (float)float0, 0.01F);
  7: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());

Test case 5

  1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
  2: Bases bases0 = new Bases(genbankStreamSequence0);
  3: Strand strand0 = bases0.getForwardStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: codon12CorrelationAlgorithm0.getValues(0, 3663, (float[]) null);

Test case 6

  1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("IV},^^@Gh");
  2: Bases bases0 = new Bases(rawStreamSequence0);
  3: Strand strand0 = bases0.getReverseStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: float[] floatArray0 = new float[7];
  6: codon12CorrelationAlgorithm0.getValues(830, 12, floatArray0);

Test case 7

  1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("DE`Lx1$@]M");
  2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(genbankStreamSequence0);
  3: Bases bases0 = new Bases(emblStreamSequence0);
  4: Strand strand0 = bases0.getForwardStrand();
  5: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  6: float[] floatArray0 = new float[16];
  7: codon12CorrelationAlgorithm0.getValues(4, 3975, floatArray0);
  8: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());

Test case 8

  1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
  2: Bases bases0 = new Bases(fastaStreamSequence0);
  3: Strand strand0 = bases0.getReverseStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultWindowSize();
  6: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  7: assertNotNull(integer0);
  8: assertEquals(240, (int)integer0);
  9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());

Test case 9

  1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
  2: Bases bases0 = new Bases(genbankStreamSequence0);
  3: Strand strand0 = bases0.getForwardStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultMaxWindowSize();
  6: assertEquals(600, (int)integer0);
  7: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  8: assertNotNull(integer0);
  9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());

Test case 10

  1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
  2: Bases bases0 = new Bases(genbankStreamSequence0);
  3: Strand strand0 = bases0.getForwardStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultMinWindowSize();
  6: assertNotNull(integer0);
  7: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  8: assertEquals(48, (int)integer0);
  9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());

Test case 11

  1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
  2: Bases bases0 = new Bases(fastaStreamSequence0);
  3: Strand strand0 = bases0.getReverseStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultStepSize(2);
  6: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
  7: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  8: assertNull(integer0);

Test case 12

  1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
  2: Bases bases0 = new Bases(fastaStreamSequence0);
  3: Strand strand0 = bases0.getReverseStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultStepSize(1048576);
  6: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  7: assertEquals(131072, (int)integer0);
  8: assertNotNull(integer0);
  9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());

Test case 13

  1: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm((Strand) null);

Test case 14

  1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("DE`Lx1$@]M");
  2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(genbankStreamSequence0);
  3: Bases bases0 = new Bases(emblStreamSequence0);
  4: Strand strand0 = bases0.getForwardStrand();
  5: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  6: float[] floatArray0 = new float[1];
  7: codon12CorrelationAlgorithm0.getValues(4, 3975, floatArray0);

Test case 15

  1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
  2: Bases bases0 = new Bases(genbankStreamSequence0);
  3: Strand strand0 = bases0.getForwardStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: codon12CorrelationAlgorithm0.getValues(1461, 3663, (float[]) null);

Test case 16

  1: Bases bases0 = new Bases((Sequence) null);
  2: Strand strand0 = bases0.getReverseStrand();
  3: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  4: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultStepSize(3971);
  5: assertEquals(496, (int)integer0);
  6: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
  7: assertNotNull(integer0);
  8: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());

Test case 17

  1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("T8Yh)cCY0");
  2: Bases bases0 = new Bases(genbankStreamSequence0);
  3: Strand strand0 = bases0.getForwardStrand();
  4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
  5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultStepSize(114);
  6: assertEquals(14, (int)integer0);
  7: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
  8: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
  9: assertNotNull(integer0);

Source Code

  1: No source found for uk.ac.sanger.artemis.plot.Codon12CorrelationAlgorithm

EvoSuite Parameters

  • TARGET_CLASS: uk.ac.sanger.artemis.plot.Codon12CorrelationAlgorithm
  • Size: 17
  • Length: 84
  • criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
  • Coverage: 0.7595148575995352
  • BranchCoverage: 0.6666666666666666
  • MethodCoverage: 1.0
  • OutputCoverage: 0.3581081081081081


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