gffMergeFeatures(FeatureVector, Feature, Selection, EntryGroup) |  | 0% |  | 0% | 18 | 18 | 104 | 104 | 1 | 1 |
mergeFeatures(JFrame, Selection, EntryGroup) |  | 0% |  | 0% | 22 | 22 | 109 | 109 | 1 | 1 |
fixGeneNamesHelper(JFrame, EntryGroup, Feature, String) |  | 0% |  | 0% | 30 | 30 | 93 | 93 | 1 | 1 |
extendToORF(JFrame, Selection, EntryGroup, boolean) |  | 0% |  | 0% | 16 | 16 | 81 | 81 | 1 | 1 |
unmergeAllFeature(JFrame, Selection, EntryGroup) |  | 0% |  | 0% | 11 | 11 | 49 | 49 | 1 | 1 |
autoGeneName() |  | 0% |  | 0% | 12 | 12 | 67 | 67 | 1 | 1 |
deleteSelectedBases(String) |  | 0% |  | 0% | 16 | 16 | 61 | 61 | 1 | 1 |
deleteSelectedFeatures(JFrame, Selection, EntryGroup) |  | 0% |  | 0% | 16 | 16 | 46 | 46 | 1 | 1 |
fixStopCodons() |  | 0% |  | 0% | 10 | 10 | 40 | 40 | 1 | 1 |
moveFeatures(FeatureVector, Entry) |  | 0% |  | 0% | 6 | 6 | 36 | 36 | 1 | 1 |
editSelectedFeatures(JFrame, EntryGroup, Selection, GotoEventSource) |  | 0% |  | 0% | 9 | 9 | 31 | 31 | 1 | 1 |
convertQualifier(JFrame, Selection) |  | 0% |  | 0% | 7 | 7 | 43 | 43 | 1 | 1 |
duplicateFeatures(JFrame, Selection, EntryGroup) |  | 0% |  | 0% | 12 | 12 | 40 | 40 | 1 | 1 |
addBasesFromFile() |  | 0% |  | 0% | 8 | 8 | 46 | 46 | 1 | 1 |
editSelectedFeatures(EntryGroup, Selection, GotoEventSource, Feature, ActionListener, ActionListener) |  | 0% |  | 0% | 11 | 11 | 28 | 28 | 1 | 1 |
convertKeys(JFrame, Selection) |  | 0% |  | 0% | 5 | 5 | 29 | 29 | 1 | 1 |
unmergeFeature(JFrame, Selection, EntryGroup) |   | 68% |   | 54% | 10 | 13 | 27 | 92 | 0 | 1 |
deleteSelectedSegments() |  | 0% |  | 0% | 5 | 5 | 25 | 25 | 1 | 1 |
autoGeneNameHelper(FeatureVector, String, int, int, String, boolean, int) |  | 0% |  | 0% | 5 | 5 | 23 | 23 | 1 | 1 |
copyFeatures(FeatureVector, Entry) |  | 0% |  | 0% | 3 | 3 | 25 | 25 | 1 | 1 |
removeIntrons() |  | 0% |  | 0% | 4 | 4 | 25 | 25 | 1 | 1 |
trimSelected(JFrame, Selection, EntryGroup, boolean, boolean) |  | 0% |  | 0% | 6 | 6 | 25 | 25 | 1 | 1 |
fixGeneNames(JFrame, EntryGroup, Selection) |  | 0% |  | 0% | 5 | 5 | 20 | 20 | 1 | 1 |
addGeneModelFeaturesToSelection() |  | 0% |  | 0% | 6 | 6 | 15 | 15 | 1 | 1 |
removeQualifier(JFrame, Selection) |  | 0% |  | 0% | 3 | 3 | 16 | 16 | 1 | 1 |
deleteFeature(JFrame, Feature, Selection, FeatureVector) |  | 0% |  | 0% | 2 | 2 | 16 | 16 | 1 | 1 |
reverseAndComplement() |  | 0% |  | 0% | 4 | 4 | 19 | 19 | 1 | 1 |
addBases() |  | 0% |  | 0% | 4 | 4 | 12 | 12 | 1 | 1 |
removeQualifierFromFeatures(FeatureVector, String) |  | 0% |  | 0% | 3 | 3 | 16 | 16 | 1 | 1 |
getGeneModels(FeatureVector) |  | 0% |  | 0% | 5 | 5 | 13 | 13 | 1 | 1 |
mergeQualifiers(Feature, Feature) |  | 0% |  | 0% | 6 | 6 | 13 | 13 | 1 | 1 |
setFastaHeaderPositionsOnReverseComplement(RawStreamSequence) |  | 0% |  | 0% | 3 | 3 | 9 | 9 | 1 | 1 |
editHeader() |  | 0% |  | 0% | 3 | 3 | 10 | 10 | 1 | 1 |
refreshMenu() |   | 95% |   | 54% | 10 | 12 | 8 | 161 | 0 | 1 |
addQualifiers(JFrame, Selection) |  | 0% |  | 0% | 3 | 3 | 10 | 10 | 1 | 1 |
setGffId(Feature, Feature) |  | 0% | | n/a | 1 | 1 | 11 | 11 | 1 | 1 |
editSubSequence() |  | 0% |  | 0% | 2 | 2 | 6 | 6 | 1 | 1 |
redo(JFrame, Selection, EntryGroup) |  | 0% |  | 0% | 3 | 3 | 6 | 6 | 1 | 1 |
makeSelectionStartVisible() |  | 0% | | n/a | 1 | 1 | 4 | 4 | 1 | 1 |
duplicateGeneFeatures(JFrame, FeatureVector, EntryGroup) |   | 52% |   | 50% | 1 | 2 | 2 | 4 | 0 | 1 |
undo(JFrame, Selection, EntryGroup) |   | 66% |   | 50% | 3 | 4 | 2 | 7 | 0 | 1 |
entryChanged(EntryChangeEvent) |  | 0% |  | 0% | 2 | 2 | 3 | 3 | 1 | 1 |
entryGroupChanged(EntryGroupChangeEvent) | | 0% |  | 0% | 2 | 2 | 3 | 3 | 1 | 1 |
getReadOnlyFeatures(FeatureVector) |  | 87% |   | 75% | 1 | 3 | 1 | 6 | 0 | 1 |
static {...} |  | 100% | | n/a | 0 | 1 | 0 | 25 | 0 | 1 |
EditMenu(JFrame, Selection, GotoEventSource, EntryGroup, BasePlotGroup, String, DisplayComponent) |  | 100% | | n/a | 0 | 1 | 0 | 12 | 0 | 1 |
EditMenu(JFrame, Selection, GotoEventSource, EntryGroup, BasePlotGroup, DisplayComponent) |  | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 |
getEntryGroup() | | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |