Summary

Test suite

Test case 1

  1: char[] charArray0 = new char[9];
  2: charArray0[0] = ']';
  3: charArray0[1] = '';
  4: charArray0[2] = 'D';
  5: charArray0[3] = '2';
  6: charArray0[4] = '2';
  7: charArray0[5] = 'G';
  8: charArray0[6] = 'e';
  9: charArray0[7] = 't';
 10: charArray0[8] = 'c';
 11: Short short0 = new Short((short)0);
 12: Integer integer0 = JLayeredPane.DEFAULT_LAYER;
 13: PartialSequence partialSequence0 = new PartialSequence(charArray0, (-145), 0, short0, integer0);
 14: Bases bases0 = new Bases(partialSequence0);
 15: Strand strand0 = bases0.getReverseStrand();
 16: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
 17: gCSDWindowAlgorithm0.getDefaultMinWindowSize();

Test case 2

  1: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm((Strand) null);
  2: gCSDWindowAlgorithm0.getMinimumInternal();
  3: gCSDWindowAlgorithm0.getDefaultWindowSize();
  4: String string0 = "qes0\\";
  5: boolean boolean0 = true;
  6: gCSDWindowAlgorithm0.setUserMaxMin(boolean0);
  7: gCSDWindowAlgorithm0.setRevCompDisplay(boolean0);
  8: gCSDWindowAlgorithm0.getMinimumInternal();
  9: boolean boolean1 = false;
 10: gCSDWindowAlgorithm0.setScalingFlag(boolean1);
 11: gCSDWindowAlgorithm0.setAlgorithmName(string0);
 12: gCSDWindowAlgorithm0.getDefaultWindowSize();
 13: gCSDWindowAlgorithm0.setUserMaxMin(boolean0);
 14: boolean boolean2 = false;
 15: int int0 = 0;
 16: int int1 = 1039;
 17: float[] floatArray0 = new float[1];
 18: float float0 = 0.0F;
 19: floatArray0[0] = float0;
 20: gCSDWindowAlgorithm0.getValues(int0, int1, floatArray0);
 21: gCSDWindowAlgorithm0.setScalingFlag(boolean2);
 22: gCSDWindowAlgorithm0.getDefaultWindowSize();
 23: int int2 = 201;
 24: gCSDWindowAlgorithm0.getDefaultStepSize(int2);
 25: gCSDWindowAlgorithm0.getDefaultWindowSize();
 26: gCSDWindowAlgorithm0.getDefaultMaxWindowSize();
 27: gCSDWindowAlgorithm0.getValueCount();
 28: gCSDWindowAlgorithm0.getMaximumInternal();
 29: gCSDWindowAlgorithm0.getValueCount();

Test case 3

  1: char[] charArray0 = new char[3];
  2: charArray0[0] = 'c';
  3: charArray0[1] = 'u';
  4: charArray0[2] = '+';
  5: Short short0 = new Short((short) (-961));
  6: Integer integer0 = JLayeredPane.MODAL_LAYER;
  7: PartialSequence partialSequence0 = new PartialSequence(charArray0, 100, 5, short0, integer0);
  8: Bases bases0 = new Bases(partialSequence0);
  9: Strand strand0 = bases0.getReverseStrand();
 10: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
 11: float[] floatArray0 = new float[5];
 12: floatArray0[0] = (float) 'u';
 13: floatArray0[1] = (float) 1;
 14: floatArray0[2] = (float) 100;
 15: floatArray0[3] = (float) 'u';
 16: floatArray0[4] = (float) 'c';
 17: gCSDWindowAlgorithm0.getValues(16, 5, floatArray0);

Test case 4

  1: char[] charArray0 = new char[2];
  2: charArray0[0] = '(';
  3: charArray0[1] = '?';
  4: int int0 = 3893;
  5: Short short0 = new Short((short)0);
  6: Integer integer0 = JLayeredPane.DEFAULT_LAYER;
  7: PartialSequence partialSequence0 = new PartialSequence(charArray0, 0, 3893, short0, integer0);
  8: Bases bases0 = new Bases(partialSequence0);
  9: Short.toUnsignedInt((short)0);
 10: Strand strand0 = bases0.getReverseStrand();
 11: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
 12: gCSDWindowAlgorithm0.getMinimum();
 13: gCSDWindowAlgorithm0.getMinimumInternal();
 14: gCSDWindowAlgorithm0.getValueCount();
 15: int int1 = 112;
 16: float[] floatArray0 = new float[4];
 17: floatArray0[0] = (float) 5;
 18: floatArray0[1] = (float) 0;
 19: floatArray0[2] = (float) 1;
 20: Range range0 = null;
 21: bases0.getSubSequenceC((Range) null, (-3714));
 22: gCSDWindowAlgorithm0.getAverage();
 23: StringVector stringVector0 = new StringVector();
 24: strand0.getMatchingCodons(range0, stringVector0);
 25: floatArray0[3] = (float) bases0.MEDIUM_PRIORITY;
 26: gCSDWindowAlgorithm0.getValues(int1, int0, floatArray0);
 27: gCSDWindowAlgorithm0.getDefaultMaxWindowSize();

Test case 5

  1: SimpleEntryGroup simpleEntryGroup0 = new SimpleEntryGroup();
  2: FeatureVector featureVector0 = new FeatureVector();
  3: FilteredEntryGroup filteredEntryGroup0 = new FilteredEntryGroup(simpleEntryGroup0, featureVector0, "ZJ<J,E}H&A");
  4: FeaturePredicateVector featurePredicateVector0 = new FeaturePredicateVector();
  5: FeaturePredicateConjunction featurePredicateConjunction0 = new FeaturePredicateConjunction(featurePredicateVector0, 0);
  6: String string0 = "\"{ZFe2t";
  7: FilteredEntryGroup filteredEntryGroup1 = new FilteredEntryGroup(filteredEntryGroup0, featurePredicateConjunction0, string0);
  8: Bases bases0 = filteredEntryGroup1.getBases();
  9: Strand strand0 = bases0.getForwardStrand();
 10: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
 11: gCSDWindowAlgorithm0.getDefaultStepSize(strand0.REVERSE);

Test case 6

  1: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(" DZ]YGB");
  2: Bases bases0 = new Bases(emblStreamSequence0);
  3: bases0.getAverageGCPercent();
  4: bases0.getACount();
  5: Strand strand0 = bases0.getForwardStrand();
  6: emblStreamSequence0.copy();
  7: emblStreamSequence0.copy();
  8: Bases.reverseComplement("internal error - unexpected exception: ");
  9: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
 10: gCSDWindowAlgorithm0.getDefaultWindowSize();
 11: gCSDWindowAlgorithm0.setRevCompDisplay(true);
 12: gCSDWindowAlgorithm0.setUserMaxMin(true);
 13: gCSDWindowAlgorithm0.getMinimumInternal();
 14: Integer integer0 = gCSDWindowAlgorithm0.getDefaultMaxWindowSize();
 15: assertEquals(5000, (int)integer0);
 16: 
 17: emblStreamSequence0.getSubSequence(1000, (-708));
 18: Range range0 = new Range(0);
 19: range0.copy();
 20: strand0.getRawSubSequence(range0);
 21: gCSDWindowAlgorithm0.getMaximumInternal();
 22: Float float0 = gCSDWindowAlgorithm0.getMaximumInternal();
 23: assertEquals(100.0F, (float)float0, 0.01F);
 24: 
 25: gCSDWindowAlgorithm0.getMinimumInternal();
 26: gCSDWindowAlgorithm0.getMinimumInternal();
 27: Integer integer1 = gCSDWindowAlgorithm0.getDefaultWindowSize();
 28: assertEquals(1000, (int)integer1);
 29: 
 30: Float float1 = gCSDWindowAlgorithm0.getMinimumInternal();
 31: assertEquals(0.0F, (float)float1, 0.01F);
 32: 
 33: gCSDWindowAlgorithm0.getAverage();
 34: float[] floatArray0 = new float[3];
 35: floatArray0[0] = (float) (-5);
 36: floatArray0[1] = (float) 1;
 37: floatArray0[2] = (float) 5;
 38: gCSDWindowAlgorithm0.getValues(2, 520, floatArray0);
 39: assertFalse(gCSDWindowAlgorithm0.scalingFlag());

Test case 7

  1: uk.ac.sanger.artemis.Feature feature0 = new uk.ac.sanger.artemis.Feature((Feature) null);
  2: int int0 = 49;
  3: Range range0 = new Range(int0);
  4: FeatureSegment featureSegment0 = new FeatureSegment(feature0, range0);
  5: Marker marker0 = featureSegment0.getEnd();
  6: Strand strand0 = marker0.getStrand();
  7: strand0.getRawPosition(marker0.LISTENER_PRIORITY);
  8: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
  9: gCSDWindowAlgorithm0.getDefaultMinWindowSize();
 10: gCSDWindowAlgorithm0.getMinimumInternal();
 11: int int1 = (-984);
 12: range0.change(featureSegment0.REVERSE_STRAND, int1);
 13: gCSDWindowAlgorithm0.getDefaultMaxWindowSize();
 14: gCSDWindowAlgorithm0.getAverage();
 15: gCSDWindowAlgorithm0.getAverage();
 16: gCSDWindowAlgorithm0.getValueCount();
 17: feature0.getFirstCodingBaseMarker();
 18: int int2 = 1861;
 19: gCSDWindowAlgorithm0.getDefaultStepSize(int2);
 20: int int3 = 0;
 21: gCSDWindowAlgorithm0.getDefaultStepSize(int3);
 22: int int4 = 0;
 23: gCSDWindowAlgorithm0.getDefaultStepSize(int4);

Test case 8

  1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("G)", "G)");
  2: Bases bases0 = new Bases(fastaStreamSequence0);
  3: Strand strand0 = bases0.getForwardStrand();
  4: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
  5: gCSDWindowAlgorithm0.setUserMin((-5));
  6: float[] floatArray0 = new float[0];
  7: gCSDWindowAlgorithm0.getValues((-3462), 5000, floatArray0);

Test case 9

  1: Bases bases0 = new Bases((Sequence) null);
  2: Strand strand0 = bases0.getForwardStrand();
  3: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
  4: float[] floatArray0 = new float[9];
  5: floatArray0[0] = (float) 2;
  6: floatArray0[1] = (float) 1358;
  7: floatArray0[2] = (float) 0;
  8: floatArray0[3] = (float) 1358;
  9: floatArray0[4] = (float) 1358;
 10: floatArray0[5] = (float) (-1);
 11: floatArray0[6] = (float) 5;
 12: floatArray0[7] = (float) 5;
 13: floatArray0[8] = 0.0F;
 14: gCSDWindowAlgorithm0.getValues((-1), 1358, floatArray0);

Test case 10

  1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("'K", "'K");
  2: Bases bases0 = new Bases(fastaStreamSequence0);
  3: Strand strand0 = bases0.getForwardStrand();
  4: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
  5: gCSDWindowAlgorithm0.getDefaultStepSize((-1676));
  6: gCSDWindowAlgorithm0.getAverage();

Test case 11

  1: float[] floatArray0 = new float[7];
  2: floatArray0[0] = (float) 513;
  3: floatArray0[1] = (float) 843;
  4: floatArray0[2] = (float) 513;
  5: floatArray0[3] = (float) 513;
  6: floatArray0[5] = (float) 843;
  7: floatArray0[6] = (float) 513;
  8: StringReader stringReader0 = new StringReader("b_WV");
  9: LinePushBackReader linePushBackReader0 = new LinePushBackReader(stringReader0);
 10: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(linePushBackReader0);
 11: Bases bases0 = new Bases(emblStreamSequence0);
 12: Strand strand0 = bases0.getReverseStrand();
 13: GCSDWindowAlgorithm gCSDWindowAlgorithm0 = new GCSDWindowAlgorithm(strand0);
 14: gCSDWindowAlgorithm0.getAverage();

Source Code

  1: No source found for uk.ac.sanger.artemis.plot.GCSDWindowAlgorithm

EvoSuite Parameters

  • TARGET_CLASS: uk.ac.sanger.artemis.plot.GCSDWindowAlgorithm
  • Size: 11
  • Length: 195
  • criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
  • Coverage: 0.7215205044673212
  • BranchCoverage: 0.6153846153846154
  • MethodCoverage: 1.0
  • OutputCoverage: 0.35135135135135137


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