Test case 1
1: GeneUtils geneUtils0 = new GeneUtils();
Test case 2
1: GeneUtils.getUniqueName((Feature) null);
Test case 3
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.checkTranscriptBoundary((Feature) null, chadoCanonicalGene0);
Test case 4
1: String[] stringArray0 = GeneUtils.getNonCodingTranscripts();
2: assertNotNull(stringArray0);
Test case 5
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.checkGeneBoundary(chadoCanonicalGene0);
3: assertEquals(0, chadoCanonicalGene0.getSrcfeature_id());
Test case 6
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.deleteAllFeature((Feature) null, chadoCanonicalGene0);
Test case 7
1: boolean boolean0 = GeneUtils.isHiddenFeature("17~8S8Q,x$FDm5\"zx7&");
2: assertFalse(boolean0);
Test case 8
1: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
2: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(emblStreamFeature0, false);
3: gFFStreamFeature0.setLazyLoaded(true);
4: GeneUtils.addLazyQualifiers(gFFStreamFeature0);
5: assertFalse(gFFStreamFeature0.isReadOnly());
Test case 9
1: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
2: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(emblStreamFeature0, false);
3: GeneUtils.addLazyQualifiers(gFFStreamFeature0);
4: assertTrue(gFFStreamFeature0.isVisible());
Test case 10
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.complementGeneModel(chadoCanonicalGene0);
Test case 11
1: GeneUtils.complementGeneModel((ChadoCanonicalGene) null);
Test case 12
1: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
2: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(emblStreamFeature0);
3: Clipboard clipboard0 = new Clipboard((String) null);
4: Selection selection0 = new Selection(clipboard0);
5: RangeVector rangeVector0 = selection0.getSelectionRanges();
6: Range range0 = new Range(1265, 1265);
7: rangeVector0.add(range0);
8: GeneUtils.addSegment(gFFStreamFeature0, rangeVector0, "Y\"Z*kug)qJ");
9: assertFalse(rangeVector0.isEmpty());
Test case 13
1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("}8ZH.E,]W/");
2: Bases bases0 = new Bases(rawStreamSequence0);
3: SimpleEntryGroup simpleEntryGroup0 = new SimpleEntryGroup(bases0);
4: FeatureVector featureVector0 = new FeatureVector();
5: FilteredEntryGroup filteredEntryGroup0 = new FilteredEntryGroup(simpleEntryGroup0, featureVector0, "hm q<b%?4iS6=7\"a");
6: Entry entry0 = filteredEntryGroup0.createEntry();
7: Feature feature0 = filteredEntryGroup0.createFeature();
8: Range range0 = feature0.getMaxRawRange();
9: FeatureVector featureVector1 = entry0.getFeaturesInRange(range0);
10: GeneUtils.showHideGeneFeatures(featureVector1);
11: assertNotSame(featureVector1, featureVector0);
Test case 14
1: SimpleEntryGroup simpleEntryGroup0 = new SimpleEntryGroup();
2: FilteredEntryGroup filteredEntryGroup0 = new FilteredEntryGroup(simpleEntryGroup0, (FeatureVector) null, ")~GP_nC!");
3: Bases bases0 = new Bases((Sequence) null);
4: Entry entry0 = Entry.newEntry(bases0);
5: filteredEntryGroup0.add(entry0);
6: String string0 = GeneUtils.promptForUniquename((EntryGroup) simpleEntryGroup0, false);
7: assertNull(string0);
Test case 15
1: SimpleEntryGroup simpleEntryGroup0 = new SimpleEntryGroup();
2: FilteredEntryGroup filteredEntryGroup0 = new FilteredEntryGroup(simpleEntryGroup0, (FeaturePredicate) null, "pseudogenic_exon");
3: filteredEntryGroup0.createEntry("pseudogenic_exon");
4: boolean boolean0 = GeneUtils.isDatabaseEntry((EntryGroup) simpleEntryGroup0);
5: assertFalse(boolean0);
Test case 16
1: SimpleEntryGroup simpleEntryGroup0 = new SimpleEntryGroup();
2: FilteredEntryGroup filteredEntryGroup0 = new FilteredEntryGroup(simpleEntryGroup0, (FeaturePredicate) null, "pseudogenic_exon");
3: filteredEntryGroup0.createEntry("pseudogenic_exon");
4: boolean boolean0 = GeneUtils.isGFFEntry(simpleEntryGroup0);
5: assertFalse(boolean0);
Test case 17
1: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
2: boolean boolean0 = GeneUtils.isDatabaseEntry((Feature) emblStreamFeature0);
3: assertFalse(boolean0);
Test case 18
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
3: Feature feature0 = new Feature(emblStreamFeature0);
4: GeneUtils.checkTranscriptBoundary(feature0, chadoCanonicalGene0, true);
Test case 19
1: Ontology.Impl ontology_Impl0 = new Ontology.Impl("pseudogenic_transcript", "pseudogenic_transcript");
2: Set<Object> set0 = ontology_Impl0.getTriples((Term) null, (Term) null, (Term) null);
3: GeneUtils.fixParentQualifier("pseudogenic_transcript", "pseudogenic_transcript", set0);
4: assertEquals(0, set0.size());
Test case 20
1: DoubleAlphabet.SubDoubleAlphabet doubleAlphabet_SubDoubleAlphabet0 = DoubleAlphabet.getSubAlphabet((-3098.8628421022263), (-3098.8628421022263));
2: DoubleAlphabet.DoubleSymbol doubleAlphabet_DoubleSymbol0 = doubleAlphabet_SubDoubleAlphabet0.getSymbol((-3098.8628421022263));
3: Set<Object> set0 = doubleAlphabet_DoubleSymbol0.getBases();
4: GeneUtils.fixParentQualifier("\"dD", " \"4P2", set0);
Test case 21
1: BlastEntryInformation blastEntryInformation0 = new BlastEntryInformation();
2: Key key0 = blastEntryInformation0.getDefaultKey();
3: boolean boolean0 = GeneUtils.isNonCodingTranscripts(key0);
4: assertFalse(boolean0);
Test case 22
1: Key key0 = new Key("rRNA");
2: boolean boolean0 = GeneUtils.isNonCodingTranscripts(key0);
3: assertTrue(boolean0);
Test case 23
1: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
2: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(emblStreamFeature0, false);
3: FeatureForUpdatingResidues featureForUpdatingResidues0 = GeneUtils.getFeatureForUpdatingResidues(gFFStreamFeature0);
4: assertNull(featureForUpdatingResidues0);
Test case 24
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.checkGeneBoundary(chadoCanonicalGene0, true);
3: assertEquals(0, chadoCanonicalGene0.getSeqlen());
Test case 25
1: boolean boolean0 = GeneUtils.isFeatureToUpdateResidues("snRNA");
2: assertTrue(boolean0);
Test case 26
1: GeneUtils.addLazyQualifiers((GFFStreamFeature) null);
Test case 27
1: GeneUtils.checkGeneBoundary((ChadoCanonicalGene) null, false);
Test case 28
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.checkTranscriptBoundary((Feature) null, chadoCanonicalGene0, true);
Test case 29
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.convertPseudo(chadoCanonicalGene0);
Test case 30
1: Clipboard clipboard0 = new Clipboard((String) null);
2: Selection selection0 = new Selection(clipboard0);
3: SimpleGotoEventSource simpleGotoEventSource0 = new SimpleGotoEventSource((EntryGroup) null);
4: GeneUtils.createGeneModel((JFrame) null, selection0, (EntryGroup) null, simpleGotoEventSource0);
Test case 31
1: Clipboard clipboard0 = new Clipboard("B`,hixP-sjxMSG'Ag");
2: Selection selection0 = new Selection(clipboard0);
3: FeatureVector featureVector0 = selection0.getAllFeatures();
4: GeneUtils.defineShowHideGeneFeatures(featureVector0);
Test case 32
1: GeneUtils.defineShowHideGeneFeatures((FeatureVector) null);
Test case 33
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.deleteAllFeature((Feature) null, chadoCanonicalGene0, true);
Test case 34
1: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
2: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(emblStreamFeature0, false);
3: GeneUtils.deriveResidues(gFFStreamFeature0);
Test case 35
1: HashSet<MSPcrunchDocumentEntry> hashSet0 = new HashSet<MSPcrunchDocumentEntry>(28);
2: hashSet0.add((MSPcrunchDocumentEntry) null);
3: GeneUtils.fixParentQualifier("", "", hashSet0);
Test case 36
1: GeneUtils.getFeatureForUpdatingResidues((GFFStreamFeature) null);
Test case 37
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.isBoundaryOK(chadoCanonicalGene0);
Test case 38
1: GeneUtils.isDatabaseEntry((EntryGroup) null);
Test case 39
1: GeneUtils.isDatabaseEntry((Feature) null);
Test case 40
1: GeneUtils.isGFFEntry((EntryGroup) null);
Test case 41
1: GeneUtils.isNonCodingTranscripts((Key) null);
Test case 42
1: GeneUtils.isObsolete((GFFStreamFeature) null);
Test case 43
1: ChadoCanonicalGene chadoCanonicalGene0 = new ChadoCanonicalGene();
2: GeneUtils.isStrandOK(chadoCanonicalGene0);
Test case 44
1: SimpleEntryGroup simpleEntryGroup0 = new SimpleEntryGroup();
2: GeneUtils.promptForUniquename((EntryGroup) simpleEntryGroup0, false);
Test case 45
1: HashSet<List> hashSet0 = new HashSet<List>();
2: GeneUtils.propagateId((GFFStreamFeature) null, "GO", hashSet0);
Test case 46
1: GeneUtils.showHideGeneFeatures((FeatureVector) null);
Test case 47
1: boolean boolean0 = GeneUtils.isFeatureToUpdateResidues("^< ^");
2: assertFalse(boolean0);
Test case 48
1: boolean boolean0 = GeneUtils.isHiddenFeature("pseudogenic_transcript");
2: assertTrue(boolean0);
Test case 49
1: SimpleEntryGroup simpleEntryGroup0 = new SimpleEntryGroup();
2: GeneUtils.promptForUniquename((EntryGroup) simpleEntryGroup0, false, (Range) null);