Summary

Test suite

Test case 1

  1: String string0 = "repeat_unit";
  2: CvTerm cvTerm0 = DatabaseDocument.getCvTermByCvTermName("repeat_unit");
  3: String string1 = null;
  4: int int0 = (-222);
  5: StringContent stringContent0 = new StringContent(int0);
  6: PlainDocument plainDocument0 = new PlainDocument(stringContent0);
  7: String string2 = "the base position (";
  8: JPasswordField jPasswordField0 = new JPasswordField(plainDocument0, string2, int0);
  9: DefaultTreeCellRenderer defaultTreeCellRenderer0 = new DefaultTreeCellRenderer();
 10: defaultTreeCellRenderer0.getVerticalTextPosition();
 11: Color color0 = defaultTreeCellRenderer0.getBorderSelectionColor();
 12: jPasswordField0.setForeground(color0);
 13: jPasswordField0.setToolTipText(string2);
 14: plainDocument0.readLock();
 15: DatabaseDocument databaseDocument0 = new DatabaseDocument(string1, jPasswordField0);
 16: String string3 = "G:#rXJd";
 17: databaseDocument0.getGffDocuments(string3, string0, string2);
 18: String string4 = "";
 19: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
 20: Cv cv0 = new Cv();
 21: String string5 = "htsjdk.variant.variantcontext.Genotype";
 22: JPasswordField jPasswordField1 = new JPasswordField(string5, int0);
 23: KeyStroke keyStroke0 = KeyStroke.getKeyStroke(int0, int0);
 24: jPasswordField1.getConditionForKeyStroke(keyStroke0);
 25: HierarchyListener hierarchyListener0 = mock(HierarchyListener.class, new ViolatedAssumptionAnswer());
 26: HierarchyListener hierarchyListener1 = AWTEventMulticaster.add(hierarchyListener0, hierarchyListener0);
 27: HierarchyListener hierarchyListener2 = AWTEventMulticaster.remove(hierarchyListener1, hierarchyListener1);
 28: jPasswordField1.removeHierarchyListener(hierarchyListener2);
 29: JTextComponent.AccessibleJTextComponent jTextComponent_AccessibleJTextComponent0 = jPasswordField1.new AccessibleJTextComponent();
 30: jTextComponent_AccessibleJTextComponent0.getAccessibleIcon();
 31: plainDocument0.removeDocumentListener(jTextComponent_AccessibleJTextComponent0);
 32: List<Object> list0 = iBatisDAO0.getAllTermsInCvWithCount(cv0);
 33: databaseDocument0.getFeatureLocsByListOfIds(list0);
 34: DatabaseDocument.getCvtermID(string4);
 35: databaseDocument0.insertCvTerm(cvTerm0);
 36: databaseDocument0.insertCvTerm(cvTerm0);
 37: String string6 = "9 C`1=1OI-rL";
 38: String string7 = "";
 39: databaseDocument0.getGffDocuments(string2, string6, string7);
 40: databaseDocument0.getIdFeatureStore();
 41: databaseDocument0.getCdsFeatureLocsByTranscriptName(string2);
 42: databaseDocument0.readable();

Test case 2

  1: List<String> list0 = DatabaseDocument.getCvControledCurationNames();
  2: String string0 = "Y1IEQFu:KvprQqYy";
  3: int int0 = 1197;
  4: GapContent gapContent0 = new GapContent(int0);
  5: StyleContext styleContext0 = null;
  6: DefaultStyledDocument defaultStyledDocument0 = new DefaultStyledDocument(gapContent0, styleContext0);
  7: int int1 = 4481;
  8: JPasswordField jPasswordField0 = new JPasswordField(defaultStyledDocument0, string0, int1);
  9: boolean boolean0 = true;
 10: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
 11: DatabaseDocument databaseDocument0 = new DatabaseDocument(string0, jPasswordField0, string0, string0, boolean0, inputStreamProgressListener0);
 12: databaseDocument0.getParentFeaturesByChildFeatureIds(list0);
 13: int int2 = 2;
 14: int int3 = 1058;
 15: TextField textField0 = new TextField(databaseDocument0.TRANSCRIPT, int3);
 16: Timestamp timestamp0 = new Timestamp(int2);
 17: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
 18: EmblStreamFeature emblStreamFeature1 = new EmblStreamFeature(emblStreamFeature0);
 19: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(emblStreamFeature1);
 20: String string1 = "[,X,,r5`g";
 21: ChadoTransaction chadoTransaction0 = new ChadoTransaction(int2, textField0, timestamp0, gFFStreamFeature0, string1, databaseDocument0.CONTROLLED_CURATION_TAG_CVNAME);
 22: DatabaseDocument.getUpdateResiduesColumnTransactions(chadoTransaction0);

Test case 3

  1: JPasswordField jPasswordField0 = new JPasswordField();
  2: String string0 = null;
  3: boolean boolean0 = false;
  4: DatabaseDocument databaseDocument0 = new DatabaseDocument("", jPasswordField0, (String) null, (String) null, false, (InputStreamProgressListener) null);
  5: String string1 = "";
  6: DatabaseDocument.CONTROLLED_CURATION_TAG_CVNAME = databaseDocument0.PRODUCTS_TAG_CVNAME;
  7: JdbcDAO jdbcDAO0 = new JdbcDAO(string1, jPasswordField0);
  8: DatabaseDocument.CHADO_INFER_CDS = boolean0;
  9: List<Object> list0 = jdbcDAO0.getSchema();
 10: List<Object> list1 = databaseDocument0.getFeaturePropByFeatureIds(list0);
 11: jdbcDAO0.delete(string1);
 12: jdbcDAO0.getResidueType(string0);
 13: databaseDocument0.getFeaturePropByFeatureIds(list1);
 14: databaseDocument0.getFeaturePropByFeatureIds(list1);
 15: String string2 = "F4gyt,4SWEfF";
 16: databaseDocument0.getPartOfFeatures(string2);
 17: String string3 = "";
 18: Vector<Feature> vector0 = databaseDocument0.getPolypeptideFeatures(string3);
 19: databaseDocument0.ping();
 20: DatabaseDocument.getCvControledCurationNames();
 21: databaseDocument0.getClustersByFeatureIds(vector0);
 22: boolean boolean1 = false;
 23: databaseDocument0.setReadChildren(boolean1);
 24: databaseDocument0.isLazyFeatureLoad();
 25: int int0 = 0;
 26: JViewport jViewport0 = new JViewport();
 27: long long0 = (-776L);
 28: Timestamp timestamp0 = new Timestamp(long0);
 29: String string4 = "";
 30: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(string4);
 31: String string5 = "VU5|_]X";
 32: ChadoTransaction chadoTransaction0 = new ChadoTransaction(int0, jViewport0, timestamp0, gFFStreamFeature0, string5, string1);
 33: ChadoTransaction chadoTransaction1 = chadoTransaction0.copy();
 34: DatabaseDocument.getUpdateResiduesColumnTransactions(chadoTransaction1);

Test case 4

  1: SshLogin sshLogin0 = new SshLogin();
  2: JPasswordField jPasswordField0 = sshLogin0.getJPasswordField();
  3: ByteBuffer byteBuffer0 = new ByteBuffer();
  4: DatabaseDocument databaseDocument0 = new DatabaseDocument("u", jPasswordField0, "3]", "3]", byteBuffer0, "u");
  5: databaseDocument0.readable();

Test case 5

  1: String string0 = "ungapped id";
  2: JPasswordField jPasswordField0 = new JPasswordField(0);
  3: DatabaseDocument databaseDocument0 = new DatabaseDocument("ungapped id", jPasswordField0);
  4: Organism organism0 = new Organism();
  5: CvTerm cvTerm0 = DatabaseDocument.getCvTermByCvPartAndCvTerm("RILEY", "CC_");
  6: boolean boolean0 = true;
  7: boolean boolean1 = false;
  8: Timestamp timestamp0 = null;
  9: Feature feature0 = new Feature(organism0, cvTerm0, string0, boolean0, boolean1, timestamp0, timestamp0);
 10: int int0 = 0;
 11: Range range0 = new Range(int0);
 12: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
 13: DatabaseDocument databaseDocument1 = new DatabaseDocument(databaseDocument0, databaseDocument0.EXONMODEL, feature0, range0, inputStreamProgressListener0);
 14: DatabaseDocument.initMDC(databaseDocument1);

Test case 6

  1: DatabaseDocument.getTYPES();
  2: JPasswordField jPasswordField0 = new JPasswordField();
  3: jPasswordField0.setAutoscrolls(false);
  4: ByteBuffer byteBuffer0 = new ByteBuffer();
  5: DatabaseDocument databaseDocument0 = new DatabaseDocument("GQ", jPasswordField0, "/H`Z%:6L%UU", "/H`Z%:6L%UU", byteBuffer0, "F0wmBupZKHB");

Test case 7

  1: JPasswordField jPasswordField0 = new JPasswordField(1462);
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument("ID=", jPasswordField0, "ID=", "ID=");

Test case 8

  1: JPasswordField jPasswordField0 = new JPasswordField();
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument("Mm^&'mi", jPasswordField0, ";current=false", "Mm^&'mi");
  3: DatabaseDocument.getCvTermByCvTermName("mRNA");

Test case 9

  1: JPasswordField jPasswordField0 = new JPasswordField();
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument("SELECT dbxref_id FROM dbxref WHERE accession='", jPasswordField0, "SELECT dbxref_id FROM dbxref WHERE accession='", "SELECT dbxref_id FROM dbxref WHERE accession='");
  3: String string0 = "";
  4: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
  5: int int0 = 0;
  6: Feature feature0 = iBatisDAO0.getFeatureById(int0);
  7: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence(databaseDocument0.PRODUCTS_TAG_CVNAME);
  8: Bases bases0 = new Bases(fastaStreamSequence0);
  9: Strand strand0 = bases0.getReverseStrand();
 10: int int1 = 120;
 11: int int2 = 1642;
 12: MarkerRange markerRange0 = strand0.makeMarkerRangeFromRawPositions(int1, int2);
 13: Range range0 = markerRange0.getRange();
 14: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
 15: DatabaseDocument databaseDocument1 = new DatabaseDocument(databaseDocument0, string0, feature0, range0, inputStreamProgressListener0);
 16: databaseDocument1.getOutputStream();

Test case 10

  1: JPasswordField jPasswordField0 = new JPasswordField("Gap");
  2: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
  3: DatabaseDocument databaseDocument0 = new DatabaseDocument("public", jPasswordField0, "", "", true, inputStreamProgressListener0);
  4: String string0 = databaseDocument0.getSrcFeatureId();
  5: assertTrue(databaseDocument0.isLazyFeatureLoad());
  6: assertTrue(databaseDocument0.isSingleSchema());
  7: assertEquals("", string0);

Test case 11

  1: DatabaseDocument databaseDocument0 = new DatabaseDocument(";", (JPasswordField) null);

Test case 12

  1: DatabaseDocument.isCvThreadAlive();
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument("`E'&[", (JPasswordField) null);
  3: JdbcDAO jdbcDAO0 = new JdbcDAO("]?", (JPasswordField) null);

Test case 13

  1: JPasswordField jPasswordField0 = new JPasswordField();
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument("a", jPasswordField0, "@@e6}p)1dlsq", "@@e6}p)1dlsq", true);

Test case 14

  1: JPasswordField jPasswordField0 = new JPasswordField("\"ht%Z4Gs9W28\"7", 0);
  2: ByteBuffer byteBuffer0 = new ByteBuffer();
  3: DatabaseDocument databaseDocument0 = new DatabaseDocument(")?}FI", jPasswordField0, "db_xref=", ")?}FI", byteBuffer0, "\"ht%Z4Gs9W28\"7");
  4: databaseDocument0.setLazyFeatureLoad(false);
  5: databaseDocument0.getIdFeatureStore();
  6: JdbcDAO jdbcDAO0 = new JdbcDAO("mRNA", jPasswordField0);

Test case 15

  1: DatabaseDocument.isCvThreadAlive();
  2: GapContent gapContent0 = new GapContent();
  3: StyleContext styleContext0 = new StyleContext();
  4: DefaultStyledDocument defaultStyledDocument0 = new DefaultStyledDocument(gapContent0, styleContext0);
  5: JPasswordField jPasswordField0 = new JPasswordField(defaultStyledDocument0, "|9:2[V84{<9P;*RZwBz", 0);
  6: ByteBuffer byteBuffer0 = new ByteBuffer();
  7: DatabaseDocument databaseDocument0 = new DatabaseDocument("|9:2[V84{<9P;*RZwBz", jPasswordField0, "~=j4*#x!", "yyyy/MM/dd HH:mm:ss", byteBuffer0, "");
  8: databaseDocument0.getGffDocuments("p66q~0ybtb;&i[OXw", "@qM2*C)RBsT9=2 )^;", "|9:2[V84{<9P;*RZwBz");

Test case 16

  1: DatabaseDocument.getCvTermByCvAndCvTerm("2$}m!}D?(#XZwX?JW", "2$}m!}D?(#XZwX?JW");

Test case 17

  1: SshLogin sshLogin0 = new SshLogin();
  2: JPasswordField jPasswordField0 = sshLogin0.getJPasswordField();
  3: DatabaseDocument databaseDocument0 = new DatabaseDocument("hA,8B`{:{YwZPwp`G", jPasswordField0);
  4: databaseDocument0.getChadoSequence("com.sshtools.j2ssh.authentication.PasswordAuthenticationClient");

Test case 18

  1: String string0 = "";
  2: JPasswordField jPasswordField0 = new JPasswordField("4Wf3sL;E}\\%(G");
  3: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
  4: DatabaseDocument databaseDocument0 = new DatabaseDocument("", jPasswordField0, "", "4Wf3sL;E}\\%(G", true, inputStreamProgressListener0);
  5: databaseDocument0.readable();
  6: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
  7: CvTerm cvTerm0 = iBatisDAO0.getGoCvTermByAccViaDb(string0);
  8: databaseDocument0.insertCvTerm(cvTerm0);

Test case 19

  1: DatabaseDocument.getCvterms("", "", false);

Test case 20

  1: DatabaseDocument.getSynonymTypeNames("pA@r:;da[K![e", (GFFStreamFeature) null);

Test case 21

  1: JPasswordField jPasswordField0 = new JPasswordField("K+1Ia");
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument("`0XG'iDKb", jPasswordField0, "polygon", "polygon", true);
  3: databaseDocument0.isLazyFeatureLoad();

Test case 22

  1: JPasswordField jPasswordField0 = new JPasswordField();
  2: jPasswordField0.echoCharIsSet();
  3: DatabaseDocument databaseDocument0 = new DatabaseDocument("#created ", jPasswordField0);
  4: databaseDocument0.isLazyFeatureLoad();
  5: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
  6: String string0 = "VERSION     ";
  7: List<Object> list0 = iBatisDAO0.getResiduesByUniqueName(string0);
  8: databaseDocument0.getSimilarityMatches(list0);
  9: int int0 = 11;
 10: Key key0 = Key.CDS;
 11: String string1 = "Efu";
 12: Location location0 = new Location(string1);
 13: QualifierVector qualifierVector0 = new QualifierVector();
 14: QualifierVector qualifierVector1 = qualifierVector0.copy();
 15: QualifierVector qualifierVector2 = qualifierVector1.copy();
 16: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(key0, location0, qualifierVector2);
 17: Timestamp timestamp0 = gFFStreamFeature0.getLastModified();
 18: String string2 = "GFF:\n";
 19: ChadoTransaction chadoTransaction0 = new ChadoTransaction(int0, iBatisDAO0, timestamp0, gFFStreamFeature0, string1, string2);
 20: DatabaseDocument.getUpdateResiduesColumnTransactions(chadoTransaction0);
 21: databaseDocument0.getGraphs();
 22: int int1 = 1940;
 23: String string3 = "dqcvT M7s4jHX'I7";
 24: databaseDocument0.getGraphData(int1, string3);

Test case 23

  1: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument((DatabaseDocument) null, "kFOV=*0d", "kFOV=*0d", true, inputStreamProgressListener0);

Test case 24

  1: JPasswordField jPasswordField0 = new JPasswordField(45);
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument("(85.aaj<G`7R~_", jPasswordField0);
  3: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
  4: DatabaseDocument databaseDocument1 = new DatabaseDocument(databaseDocument0, "", "", false, inputStreamProgressListener0);
  5: databaseDocument1.addInputStreamProgressListener((InputStreamProgressListener) null);
  6: databaseDocument1.getInputStream();

Test case 25

  1: DatabaseDocument.getCvtermFromGoId("_-/2UZ^`cSGwe");

Test case 26

  1: DatabaseDocument.getCvtermID((String) null);

Test case 27

  1: StringContent stringContent0 = new StringContent(656);
  2: StyleContext styleContext0 = new StyleContext();
  3: DefaultStyledDocument defaultStyledDocument0 = new DefaultStyledDocument(stringContent0, styleContext0);
  4: JPasswordField jPasswordField0 = new JPasswordField(defaultStyledDocument0, (String) null, 0);
  5: ByteBuffer byteBuffer0 = new ByteBuffer();
  6: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0, "_<nFvPs", (String) null, byteBuffer0, (String) null);

Test case 28

  1: JPasswordField jPasswordField0 = null;
  2: String string0 = "";
  3: String string1 = "aW3(Lm-PYK*%d^#P";
  4: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
  5: DatabaseDocument databaseDocument0 = new DatabaseDocument("", (JPasswordField) null, "", "aW3(Lm-PYK*%d^#P", true, inputStreamProgressListener0);
  6: databaseDocument0.writable();
  7: databaseDocument0.showCvTermLookUp();
  8: IBatisDAO iBatisDAO0 = new IBatisDAO(jPasswordField0);
  9: String string2 = "5xN\\m{x\\i";
 10: Feature feature0 = iBatisDAO0.getFeatureByUniqueName(databaseDocument0.EXONMODEL, string2);
 11: String string3 = "";
 12: databaseDocument0.getOrganismByCommonName(string3);
 13: String string4 = null;
 14: feature0.getFeatureProps();
 15: iBatisDAO0.getFeaturesByUniqueName(string4);
 16: List<Object> list0 = iBatisDAO0.getFeaturePubsBySrcFeature(feature0);
 17: databaseDocument0.getSimilarityMatches(list0);
 18: String string5 = null;
 19: String string6 = "";
 20: String string7 = "";
 21: DatabaseDocument databaseDocument1 = new DatabaseDocument(string5, jPasswordField0, string6, string7);
 22: DatabaseDocument.initMDC(databaseDocument1);
 23: databaseDocument0.reset();
 24: String[][][] stringArray0 = new String[1][7][0];
 25: String[][] stringArray1 = new String[4][0];
 26: String[] stringArray2 = new String[8];
 27: stringArray2[0] = string6;
 28: stringArray2[1] = databaseDocument1.CONTROLLED_CURATION_TAG_CVNAME;
 29: stringArray2[2] = string1;
 30: stringArray2[3] = databaseDocument1.CONTROLLED_CURATION_TAG_CVNAME;
 31: stringArray2[4] = string0;
 32: stringArray2[5] = databaseDocument0.CONTROLLED_CURATION_TAG_CVNAME;
 33: stringArray2[6] = string3;
 34: stringArray2[7] = databaseDocument0.EXONMODEL;
 35: stringArray1[0] = stringArray2;
 36: String[] stringArray3 = new String[5];
 37: stringArray3[0] = databaseDocument1.RILEY_TAG_CVNAME;
 38: stringArray3[1] = string1;
 39: stringArray3[2] = databaseDocument0.EXONMODEL;
 40: stringArray3[3] = databaseDocument1.RILEY_TAG_CVNAME;
 41: stringArray3[4] = databaseDocument1.RILEY_TAG_CVNAME;
 42: stringArray1[1] = stringArray3;
 43: String[] stringArray4 = new String[8];
 44: stringArray4[0] = databaseDocument0.PRODUCTS_TAG_CVNAME;
 45: stringArray4[1] = string0;
 46: stringArray4[2] = databaseDocument1.EXONMODEL;
 47: stringArray4[3] = string4;
 48: stringArray4[4] = string2;
 49: stringArray4[5] = databaseDocument0.PRODUCTS_TAG_CVNAME;
 50: stringArray4[6] = string1;
 51: stringArray4[7] = databaseDocument1.TRANSCRIPT;
 52: stringArray1[2] = stringArray4;
 53: String[] stringArray5 = new String[3];
 54: stringArray5[0] = string5;
 55: stringArray5[1] = string1;
 56: stringArray5[2] = databaseDocument1.RILEY_TAG_CVNAME;
 57: stringArray1[3] = stringArray5;
 58: stringArray0[0] = stringArray1;
 59: DatabaseDocument.setTYPES(stringArray0);

Test case 29

  1: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
  2: GFFStreamFeature gFFStreamFeature0 = new GFFStreamFeature(emblStreamFeature0);
  3: GenbankStreamFeature genbankStreamFeature0 = new GenbankStreamFeature(gFFStreamFeature0);
  4: DatabaseDocument.getCvTermByCvTermId(0, genbankStreamFeature0);

Test case 30

  1: StringContent stringContent0 = new StringContent(1142);
  2: StyleContext styleContext0 = StyleContext.getDefaultStyleContext();
  3: DefaultStyledDocument defaultStyledDocument0 = new DefaultStyledDocument(stringContent0, styleContext0);
  4: JPasswordField jPasswordField0 = new JPasswordField(defaultStyledDocument0, "Runtime Problems...\n", 1142);
  5: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
  6: DatabaseDocument databaseDocument0 = new DatabaseDocument("Runtime Problems...\n", jPasswordField0, "g*", "Runtime Problems...\n", false, inputStreamProgressListener0);
  7: DatabaseDocument.LocationComarator databaseDocument_LocationComarator0 = databaseDocument0.new LocationComarator();
  8: JdbcDAO jdbcDAO0 = new JdbcDAO("", jPasswordField0);

Test case 31

  1: SshLogin sshLogin0 = new SshLogin();
  2: JPasswordField jPasswordField0 = sshLogin0.getJPasswordField();
  3: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0, (String) null, (String) null, true);

Test case 32

  1: JPasswordField jPasswordField0 = new JPasswordField();
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0);

Test case 33

  1: JPasswordField jPasswordField0 = new JPasswordField(71);
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument("+Rf9$ZU5ghkDPZs)?", jPasswordField0, "+Rf9$ZU5ghkDPZs)?", "+Rf9$ZU5ghkDPZs)?");
  3: databaseDocument0.reset();
  4: Timestamp.valueOf((String) null);

Test case 34

  1: JPasswordField jPasswordField0 = new JPasswordField();
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0, (String) null, "?Rj3d!%.{BusxC5");

Test case 35

  1: DatabaseDocument.isCvThreadAlive();
  2: DatabaseDocument.isCvThreadAlive();
  3: JPasswordField jPasswordField0 = new JPasswordField();
  4: String string0 = "oiy";
  5: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
  6: DatabaseDocument databaseDocument0 = new DatabaseDocument(",kPCOAgKXP#;{", jPasswordField0, "oiy", "", false, inputStreamProgressListener0);
  7: String string1 = "sR bw7vQ,TMLX&>O";
  8: databaseDocument0.setName(",kPCOAgKXP#;{");
  9: boolean boolean0 = false;
 10: InputStreamProgressListener inputStreamProgressListener1 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
 11: databaseDocument0.getOrganismsContainingSrcFeatures();
 12: DatabaseDocument databaseDocument1 = new DatabaseDocument(databaseDocument0, string1, string0, boolean0, inputStreamProgressListener1);
 13: databaseDocument1.readable();
 14: String string2 = "aspect=C%3B";
 15: DatabaseDocument.getCvTermByCvTermName(string2);
 16: databaseDocument0.getPartOfFeatures(string2);

Test case 36

  1: JPasswordField jPasswordField0 = new JPasswordField(0);
  2: jPasswordField0.isFocusable();
  3: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
  4: jPasswordField0.getX();
  5: HierarchyBoundsListener hierarchyBoundsListener0 = mock(HierarchyBoundsListener.class, new ViolatedAssumptionAnswer());
  6: AWTEventMulticaster.remove(hierarchyBoundsListener0, hierarchyBoundsListener0);
  7: AWTEventMulticaster.add((HierarchyBoundsListener) null, (HierarchyBoundsListener) null);
  8: jPasswordField0.addHierarchyBoundsListener((HierarchyBoundsListener) null);
  9: DatabaseDocument databaseDocument0 = new DatabaseDocument((String) null, jPasswordField0, (String) null, (String) null, true, inputStreamProgressListener0);

Test case 37

  1: boolean boolean0 = true;
  2: InputStreamProgressListener inputStreamProgressListener0 = mock(InputStreamProgressListener.class, new ViolatedAssumptionAnswer());
  3: DatabaseDocument databaseDocument0 = new DatabaseDocument("-b5z<1", (JPasswordField) null, "-b5z<1", "-b5z<1", true, inputStreamProgressListener0);
  4: String string0 = "feature_relationship_rank=";
  5: DatabaseDocument.isCvThreadAlive();
  6: databaseDocument0.getFeatureLocsByListOfIds((List) null);
  7: databaseDocument0.getChadoSequence(string0);
  8: DatabaseDocument.CHADO_INFER_CDS = boolean0;
  9: DatabaseDocument.initMDC(databaseDocument0);
 10: databaseDocument0.readable();
 11: String string1 = "(!L2_;_r<6C1P'2j%5";
 12: databaseDocument0.getPartOfFeatures(string1);
 13: databaseDocument0.getCdsFeatureLocsByTranscriptName(string0);
 14: EmblStreamFeature emblStreamFeature0 = new EmblStreamFeature();
 15: Feature feature0 = new Feature(emblStreamFeature0);
 16: Strand strand0 = feature0.getStrand();
 17: Range range0 = feature0.getMaxRawRange();
 18: strand0.getSpacedTranslation(range0, databaseDocument0.CHADO_INFER_CDS);
 19: strand0.getTCount();
 20: EntropyAlgorithm entropyAlgorithm0 = new EntropyAlgorithm(strand0);
 21: Feature feature1 = null;
 22: boolean boolean1 = feature0.rawGreaterThan(feature1);
 23: boolean boolean2 = false;
 24: entropyAlgorithm0.setUserMaxMin(boolean2);
 25: Integer integer0 = entropyAlgorithm0.getDefaultMinWindowSize();
 26: databaseDocument0.getResidueFeatures(integer0);
 27: String string2 = "";
 28: DatabaseDocument.getCvTermByCvPartAndCvTerm(databaseDocument0.RILEY_TAG_CVNAME, string2);
 29: String[][][] stringArray0 = new String[0][5][7];
 30: DatabaseDocument.setTYPES(stringArray0);
 31: String string3 = "org.gmod.schema.general.DbXRef";
 32: DatabaseDocument.getCvterms(string3, databaseDocument0.RILEY_TAG_CVNAME, boolean1);

Test case 38

  1: JPasswordField jPasswordField0 = new JPasswordField();
  2: DatabaseDocument databaseDocument0 = new DatabaseDocument("", jPasswordField0, "", ">9+'u.:15GsD", false);
  3: databaseDocument0.getCvTermsByCvName("");

Source Code

  1: No source found for uk.ac.sanger.artemis.util.DatabaseDocument

EvoSuite Parameters

  • TARGET_CLASS: uk.ac.sanger.artemis.util.DatabaseDocument
  • Size: 38
  • Length: 367
  • criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
  • Coverage: 0.1777318862903312
  • BranchCoverage: 0.05357142857142857
  • MethodCoverage: 0.6216216216216216
  • OutputCoverage: 0.02147239263803681


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