Test case 1
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: codon12CorrelationAlgorithm0.getAverage();
Test case 2
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: Float float0 = codon12CorrelationAlgorithm0.getMinimumInternal();
6: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
7: assertEquals(0.0F, (float)float0, 0.01F);
8: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
Test case 3
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: int int0 = codon12CorrelationAlgorithm0.getValueCount();
6: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
7: assertEquals(3, int0);
8: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
Test case 4
1: Bases bases0 = new Bases((Sequence) null);
2: Strand strand0 = bases0.getReverseStrand();
3: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
4: Float float0 = codon12CorrelationAlgorithm0.getMaximumInternal();
5: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
6: assertEquals(100.0F, (float)float0, 0.01F);
7: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
Test case 5
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: codon12CorrelationAlgorithm0.getValues(0, 3663, (float[]) null);
Test case 6
1: RawStreamSequence rawStreamSequence0 = new RawStreamSequence("IV},^^@Gh");
2: Bases bases0 = new Bases(rawStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: float[] floatArray0 = new float[7];
6: codon12CorrelationAlgorithm0.getValues(830, 12, floatArray0);
Test case 7
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("DE`Lx1$@]M");
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(genbankStreamSequence0);
3: Bases bases0 = new Bases(emblStreamSequence0);
4: Strand strand0 = bases0.getForwardStrand();
5: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
6: float[] floatArray0 = new float[16];
7: codon12CorrelationAlgorithm0.getValues(4, 3975, floatArray0);
8: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
Test case 8
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultWindowSize();
6: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
7: assertNotNull(integer0);
8: assertEquals(240, (int)integer0);
9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
Test case 9
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultMaxWindowSize();
6: assertEquals(600, (int)integer0);
7: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
8: assertNotNull(integer0);
9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
Test case 10
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultMinWindowSize();
6: assertNotNull(integer0);
7: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
8: assertEquals(48, (int)integer0);
9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
Test case 11
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultStepSize(2);
6: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
7: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
8: assertNull(integer0);
Test case 12
1: FastaStreamSequence fastaStreamSequence0 = new FastaStreamSequence("5", "5");
2: Bases bases0 = new Bases(fastaStreamSequence0);
3: Strand strand0 = bases0.getReverseStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultStepSize(1048576);
6: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
7: assertEquals(131072, (int)integer0);
8: assertNotNull(integer0);
9: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
Test case 13
1: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm((Strand) null);
Test case 14
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("DE`Lx1$@]M");
2: EmblStreamSequence emblStreamSequence0 = new EmblStreamSequence(genbankStreamSequence0);
3: Bases bases0 = new Bases(emblStreamSequence0);
4: Strand strand0 = bases0.getForwardStrand();
5: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
6: float[] floatArray0 = new float[1];
7: codon12CorrelationAlgorithm0.getValues(4, 3975, floatArray0);
Test case 15
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: codon12CorrelationAlgorithm0.getValues(1461, 3663, (float[]) null);
Test case 16
1: Bases bases0 = new Bases((Sequence) null);
2: Strand strand0 = bases0.getReverseStrand();
3: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
4: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultStepSize(3971);
5: assertEquals(496, (int)integer0);
6: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
7: assertNotNull(integer0);
8: assertEquals("Reverse Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
Test case 17
1: GenbankStreamSequence genbankStreamSequence0 = new GenbankStreamSequence("T8Yh)cCY0");
2: Bases bases0 = new Bases(genbankStreamSequence0);
3: Strand strand0 = bases0.getForwardStrand();
4: Codon12CorrelationAlgorithm codon12CorrelationAlgorithm0 = new Codon12CorrelationAlgorithm(strand0);
5: Integer integer0 = codon12CorrelationAlgorithm0.getDefaultStepSize(114);
6: assertEquals(14, (int)integer0);
7: assertEquals("Correlation Scores", codon12CorrelationAlgorithm0.getAlgorithmName());
8: assertTrue(codon12CorrelationAlgorithm0.scalingFlag());
9: assertNotNull(integer0);
Source Code
1: No source found for uk.ac.sanger.artemis.plot.Codon12CorrelationAlgorithm
EvoSuite Parameters
- TARGET_CLASS: uk.ac.sanger.artemis.plot.Codon12CorrelationAlgorithm
- Size: 17
- Length: 84
- criterion: LINE;BRANCH;EXCEPTION;WEAKMUTATION;OUTPUT;METHOD;METHODNOEXCEPTION;CBRANCH
- Coverage: 0.7595148575995352
- BranchCoverage: 0.6666666666666666
- MethodCoverage: 1.0
- OutputCoverage: 0.3581081081081081
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